Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq481 145 8e-30 >seq481 Length=6868915 Score = 145 bits (160), Expect = 8e-30 Identities = 574/878 (65%), Gaps = 29/878 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| | || ||||| ||||| ||||| |||| || || || || Sbjct 949636 TTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACT 949577 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||| | | | | || |||||| || || | | | Sbjct 949576 CCATCCAATCAAACGGATTCGCCACACCGTAGACCTTCCCGTACCCGAGCGCGCCCAAAA 949517 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA-TAAGA 16852 |||||||| ||||| || ||||| || | ||| | || | |||||| || | ||| Sbjct 949516 GCCTATCCGCCACAAACTCGATATACTGACTCATCAGGTCCCGGTTCATCCCCACTAACG 949457 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || || ||||| || || | ||| || | ||| || | || || || | || Sbjct 949456 CGCAC-GGAAGCGCGTCGCAGACAAACTCCCT-CTCGATCTCGACGGCGTCGCAGACGAT 949399 Query 16912 --ACTAGCAACTCGTTCCTCGGACGGTGTA-TGTTTAAGAT-GTTTAAACATCAGACATG 16967 ||| ||||| ||||| || | | | | | || || || | | || || | Sbjct 949398 CGACTTC--ACTCGCTCCTCCGAGAGCTTCGTCCTCAGGAGCGTGTAGAGA--AGGCAGG 949343 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| ||||| || || |||| ||| | ||||| || || ||||| || | Sbjct 949342 CGAAATCGCAGTGTAAGCCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCG 949283 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| ||||| ||||| | ||| || |||| | ||| || || ||||| |||| Sbjct 949282 GCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATAC 949223 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 | |||||| | || || ||||| | || ||||||| | ||| | || || |||| Sbjct 949222 CTTCGACGCAGGCGAAAGCGATGATTCTTTCGGCGAAGGTCTGAGATCCGT--CG-ATCC 949166 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA-- 17204 | ||| |||||| ||||| | | | |||| || ||||| || || | || Sbjct 949165 ACTTCATGGCCCACTGTGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGA 949106 Query 17205 -ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | ||||| || ||| ||| | || |||||||||| ||| || |||||||| Sbjct 949105 GATGGTCTCTCTCTT---TGT-TGTCCTTGATGTACGTATCGAGGAGGAGACTGTACATC 949050 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTAT 17322 || ||||| |||||||| || || ||||| ||||| || |||||| || || |||| | Sbjct 949049 TCCGAGTGGATGTTCTCGATCGCGATCTGGAATCCATAGAAAGCA-CGCGCCTCCGAGAC 948991 Query 17323 TTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 ||| || || || | ||| | || ||||| || ||||| ||||| |||| Sbjct 948990 TTGTACATCGGACAT-GAACCTGGAAGCAAGATTCTCCAGGACGATTCCGTCTGAGGCGG 948932 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAG 17440 |||| || || | | || || ||||| | | ||| ||| | | ||| |||| Sbjct 948931 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGTCGCTCG-CCGTCGTTGAGATTCTCCCAG 948873 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 || |||| |||| || |||||||| | ||||| ||| || | ||||| Sbjct 948872 TCGCGACCGTCTTGCGATAGGTCGACTTCTTCCGCCGTCCAGAAAGATGCTTCGGCCTTC 948813 Query 17501 TTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | ||| || | ||| || || ||||| Sbjct 948812 TTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAA 948775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541039129400