Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq350 105 1e-17 seq440 104 4e-17 seq393 87.8 3e-12 seq385 84.2 3e-11 >seq350 Length=9129079 Score = 105 bits (116), Expect = 1e-17 Identities = 99/125 (79%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 124625 AATT-CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||| || || ||||| || ||||||||||||||||| || ||||| || ||||| || | Sbjct 2564484 AATTGCAGGACAAAGAGGGGATACCACCTGATCAACAGAGACTTATATTCGCAGGGAAGC 2564543 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 || |||||||| |||||||| ||| || || || || || ||||| || ||| | || | Sbjct 2564544 AACTAGAGGATGGTCGAACACTAGCTGACTACAACATCCAGAAAGAGTCCACTCTTCACT 2564603 Query 124744 TGGTT 124748 ||||| Sbjct 2564604 TGGTT 2564608 >seq440 Length=7283533 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || || || || || ||| | ||| |||| ||| | Sbjct 6972733 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGAGCTCA 6972674 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || | ||| ||||| || || ||||||||||| || || || || Sbjct 6972673 -GATACTATCGACAACGTCAAAGCTAAAATCCAGGACAAAGAAGGTATCCCCCCGGACCA 6972615 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || || |||||||| || | |||||| |||| ||||| | || || || Sbjct 6972614 GCAGAGATTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 6972555 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || |||||| | |||||||| |||||||| Sbjct 6972554 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTTCGTTTACGTGGTGGTAT 6972504 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || || || || || ||| | ||| | || ||| Sbjct 6972961 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTC- 6972903 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | || |||||||||||||| || ||||| ||||| || || Sbjct 6972902 TGACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAGGGTATCCCACCGGACCA 6972843 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||||||||| || | || || | ||||| || | ||||| || Sbjct 6972842 GCAGAGATTGATCTTTGCAGGAAAGCAGCTTGAAGACGGCCGAACTTTGGCTGATTACAA 6972783 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || ||||| || ||| | || ||||| || Sbjct 6972782 CATCCAAAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTCCGTGGTGGCAT 6972732 >seq393 Length=11819561 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||||||||| |||||||| ||||| || ||||| || || ||| | Sbjct 4935939 CAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTG 4935880 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| | ||||| ||| ||||| || || || ||||| || ||| Sbjct 4935879 GAAGATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACT 4935832 >seq385 Length=11279646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| |||||||| | ||||||||| ||||| | |||||||||||||||| | Sbjct 2131536 GCAATGTTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAA 2131477 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| ||| || |||| || || || || | |||| Sbjct 2131476 AGCTCTCCATTTGCA---ACATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATT 2131420 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | || || ||||||||| || | | |||||| || | ||||| || || Sbjct 2131419 AACTTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATTGTTC 2131360 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || || || || || | || | | ||||||||||||||| ||||||| | || | Sbjct 2131359 TTGATCTTGTTAATTACATCTAAGAGTTGATCAAATCCTTGGCCAGTATAATCAGCATGC 2131300 Query 205723 ATATC 205727 ||||| Sbjct 2131299 ATATC 2131295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755449342544000