Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq664 120 3e-22 seq440 109 6e-19 seq393 104 3e-17 seq350 82.4 9e-11 >seq664 Length=12074320 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||||| ||| || | || || |||||||| |||||||| Sbjct 3113497 TCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 3113556 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 3113557 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTT 3113615 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| ||||| || | |||||||| || || || | ||||| Sbjct 3113616 GTCAATGGTGTCGGAGCTC---TCCACCTCTAGAGTGATGGTCTTACCGGTCAAAGTCTT 3113672 Query 43169 TACAAAGATTTGCAT 43183 ||||||||| ||||| Sbjct 3113673 TACAAAGATCTGCAT 3113687 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || ||||| ||||| |||||||||||| Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | || |||||||| |||||| ||||| ||| | | | ||||| |||| || Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 3113864 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3113865 CACTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || ||||| || || ||||| |||||| Sbjct 3113917 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 3113976 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 3113977 AAAGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3114036 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATTC 43132 | || ||||||||| |||||| ||||| ||| | || | ||||| ||| || Sbjct 3114037 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 3114092 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3114093 CACCTCTAGAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3114143 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||||| || || |||| || |||||||| || ||||| Sbjct 3114636 CTCCTTCTGGATATTGTAATCAGCCAATGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 3114695 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | |||||| || | || | || ||||||||| ||| | || | || | ||| Sbjct 3114696 GATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC-TGAATCTTAGCTTTAACGT 3114754 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| |||||| |||| ||||| || || || || || |||| Sbjct 3114755 TGTCAATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTCT 3114811 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 3114812 TAACGAAGATCTGCAT 3114827 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 406658 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAA 406717 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | | |||||||| ||| || ||||| | Sbjct 406718 AATCAATCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTGACATT 406777 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || |||| || ||||| || |||||||| || || || Sbjct 406778 GTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 406837 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 406838 GAAGATCTGCATCTTT 406853 >seq440 Length=7283533 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | || |||||| ||||| |||||||| ||| Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||| ||| ||| ||| |||| ||| | | | ||||| |||| || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TC 661209 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || ||||| || ||||| | ||||| || ||||| ||||| Sbjct 661208 GACCTCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||| ||| || | || || |||||||| |||||||| Sbjct 661577 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 661518 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 661517 GATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 661459 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||| || ||||| || || |||| Sbjct 661458 TGTCAATGGTGTCAGAGCTC---TCAACCTCCAACGTGATAGTCTTGCCGGTAAGTGTCT 661402 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 661401 TCACGAAGATCTGCAT 661386 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || ||||||||| || ||||||||||||| ||| || | Sbjct 6972746 ACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCCAAAGTTCGGCC 6972805 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | || ||||||||| | || | | |||||| Sbjct 6972806 GTCTTCAAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTT 6972865 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 | | ||| |||| | |||| | | | ||||| |||| || || || | | Sbjct 6972866 AT-CTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAGCTC---TCGACCTCCAGAG 6972921 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| || ||||| || ||||| ||||| Sbjct 6972922 TGATGGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 6972961 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| | |||| |||||| || || |||||||| |||| || || | Sbjct 661145 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACC 661086 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || ||||| || | || ||||||||| | || | | ||| || Sbjct 661085 ATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGGGATACCCTCTTT 661026 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTC---GCTCGATTCCACATCGACC 43142 ||| ||| | || | |||| ||| | || ||||| |||| || || |||| Sbjct 661025 GTCT-TGAATCTTAGCCTTGA-CGTTGTCAATTGTGTCAGAGCTC---TCGACCTCGAGG 660971 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| | ||||| || ||||||||||| Sbjct 660970 GTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 660930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | |||| |||||| || || ||||||||||||| || || |||| || Sbjct 660454 ACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCG 660395 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || ||||| || || | |||||| || | || | | ||||||||| || Sbjct 660394 AGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC-TG 660336 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | || | || | ||| | | | ||||| ||| |||||| |||| ||||| || Sbjct 660335 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 660279 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || ||||| ||||| Sbjct 660278 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| ||||||| || || | || || |||||||| |||||||| Sbjct 6972086 CTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAA 6972145 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| || | || | | | ||| Sbjct 6972146 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACGT 6972204 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | |||||||| || || || | || | Sbjct 6972205 TGTCAATGGTGTCGGAGCTC---TCCACTTCCAAGGTGATGGTCTTCCCGGTCAATGTTT 6972261 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 6972262 TGACGAAGATCTGCAT 6972277 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||| || || || ||||| ||||||| || || | || || Sbjct 6972297 ACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCG 6972356 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| || Sbjct 6972357 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCC-TG 6972415 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | || | | | ||| | | | ||||| |||| ||||| || | |||||||| Sbjct 6972416 GATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTC---TCCACCTCTAAAGTGATGGT 6972472 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | ||||| || || || ||||| Sbjct 6972473 CTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 6972505 >seq393 Length=11819561 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| |||||||| || | ||| |||||| || || ||||| || || | || || | Sbjct 8004149 ACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACC 8004208 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 8004209 ATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTT 8004268 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 |||| |||||| ||||| | | | ||||| |||| || || || | || Sbjct 8004269 GTCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTC---TCAACCTCTAGAGT 8004325 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || | ||||| |||||||| ||||| Sbjct 8004326 AATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || |||||| || ||||||||||| ||| Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| || | || ||||||||| | || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| || || | ||| | | | ||||| |||| || Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTA-CGTTGTCGATAGTGTCGGAGCTC---TC 8004541 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || | || || || ||||||||||| Sbjct 8004542 AACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 >seq350 Length=9129079 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 6513468 AAAAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6513527 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 6513528 TTACCACTATACTAC 6513542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812560857400