Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq664 111 1e-19 seq393 105 4e-18 seq440 93.3 3e-14 seq350 86.0 4e-12 >seq664 Length=12074320 Score = 111 bits (122), Expect = 1e-19 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| ||| ||| |||| |||| ||| || || |||||| Sbjct 406659 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAAA 406718 Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | |||||||||| || ||| | || |||||||| ||| || ||||| | || Sbjct 406719 ATCAATCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTTGGATC-TTCGCTTTGACAT 406776 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | |||| |||||||| || | || ||||| || || || || ||||||| Sbjct 406777 TGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCA 406836 Query 34377 CAAAGATCTGCATC 34390 | |||||||||||| Sbjct 406837 CGAAGATCTGCATC 406850 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || |||| |||| || ||||| ||||||||||| | Sbjct 3114373 CCCCCACGGAGCCTGAGGACGAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCG 3114432 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || | || ||||||||| || Sbjct 3114433 AGAGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 3114492 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| || ||||| | | | | || | |||| ||| || Sbjct 3114493 ATACCCTCCTTGTCTTGAATC-TTAGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCAAC 3114551 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || | || || ||||| |||||||| Sbjct 3114552 CTCCAAAGTAATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3114599 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| |||||||| || | || | || || | || || | |||||| ||||||| Sbjct 3113724 TTCCTTCTGAATGTTGTAATCAGCCAAGGTG-CGACCATCCTCAAGCTGCTTTCCTGCGA 3113782 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 | || | || ||||||||| || | || |||||||| || ||| ||||| | Sbjct 3113783 AGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGAT-TTTGGCTTTGACG 3113841 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | |||| || || || | ||||||||||| ||||| | ||| ||| Sbjct 3113842 TTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTC 3113901 Query 34376 ACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 3113902 ACAAAGATCTGCAT 3113915 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || |||| ||| | || ||| ||||| ||||||||||| Sbjct 3113457 GAAACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTC 3113516 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || || | || || | |||||| || ||||| ||||| ||||||||||| Sbjct 3113517 AGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGG 3113576 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337 || | || |||||||| || ||| ||||| | | | | || | |||| | Sbjct 3113577 AGGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCT 3113635 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || | |||||||| || ||||| | ||| || |||||||||||||| Sbjct 3113636 CCACCTCTAGAGTGATGGTCTTACCGGTCAAAGTCTTTACAAAGATCTGCAT 3113687 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || | || || ||||| || ||||| || | | Sbjct 3114601 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCC 3114660 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || ||||| ||||||| |||||| || || Sbjct 3114661 AATGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGA 3114720 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| |||||| | | | || | || | ||| || Sbjct 3114721 ATGCCTTCCTTGTCCTGAATCTTA-GCTTTAACGTTGTCAATGGTGTCAGAGCTTTCCAC 3114779 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 3114780 CTCGAGGGTGATTGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 3114828 >seq393 Length=11819561 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||||||| | || || ||||| ||||||||||||| Sbjct 356985 CCTCCACGGAGACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 357044 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| |||||| || ||||| || | | ||||||||| || Sbjct 357045 AGTGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGG 357104 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | |||| || | |||||||| Sbjct 357105 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGAGGATTCGACC 357164 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || || || |||||||| |||||||||||| Sbjct 357165 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 357212 Score = 102 bits (112), Expect = 5e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || || ||||| || || || ||||||||||| | | Sbjct 8005278 CCACCACGAAGCCTGAGAACGAGATGCAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 8005337 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 | ||| | || || | |||||| || ||||| ||||||| |||||| || || || Sbjct 8005338 AAAGTCCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGG 8005397 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCG 34339 || || |||||||| ||||| |||||| | | | || | |||| || Sbjct 8005398 ATAC-CT-TCCTTGTCCTGGATCTTG-GCTTTAACGTTGTCGATGGTGTCGGAGCTCTCC 8005454 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | |||||||| || |||||||||||||||||||||||||||||| Sbjct 8005455 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 8005505 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || || |||||||| || || || ||||||||||| | | Sbjct 8005050 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 8005109 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | |||||| || ||||| || | || ||||||||| || Sbjct 8005110 AAAGTCCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 8005169 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | || | |||| || || Sbjct 8005170 ATACCCTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACC 8005229 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || ||||| || || || |||||||||||||| Sbjct 8005230 TCCAAAGTAATCGTCTTTCCGGTCAGGGTCTTAACAAAGATCTGCAT 8005276 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-ACAGCTGACGGTCGTCGT 34238 ||||| ||| | ||| || ||||| ||||||||||||| || || || | || | Sbjct 8004155 CACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTG-CGACCATCCT 8004213 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | |||||| || ||||| || || ||||||||||| || | || ||||||||| Sbjct 8004214 CAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCT 8004273 Query 34299 CTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||||| | || | | || | || | || || || | || ||||| Sbjct 8004274 GGAT-TTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCTAGAGTAATGGTC 8004332 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | ||| ||||||||||||||||| Sbjct 8004333 TTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 >seq440 Length=7283533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || ||||| || |||| ||| | || |||||||| ||||||||||| Sbjct 6972047 GAAGCCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 6972106 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || || | || || | |||||| || ||||| ||||| ||||||||||| Sbjct 6972107 AGCCAATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGG 6972166 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || |||||||| ||||| ||| | | | | || | |||| || Sbjct 6972167 TGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGAGCTCTC 6972226 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || ||||| | ||||| || ||||||||||| Sbjct 6972227 CACTTCCAAGGTGATGGTCTTCCCGGTCAATGTTTTGACGAAGATCTGCAT 6972277 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || || ||||| ||||||||||| | | Sbjct 661612 CCACCACGGAGCCTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 661553 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | ||||||||| ||||| ||||| ||||||||||| || Sbjct 661552 AAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 661493 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | || || Sbjct 661492 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 661433 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || |||||||| || || ||||| ||||||||||| Sbjct 661432 TCCAACGTGATAGTCTTGCCGGTAAGTGTCTTCACGAAGATCTGCAT 661386 >seq350 Length=9129079 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | || |||| ||| | || ||| ||||| |||||||| || | Sbjct 5338504 TCCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 5338563 Query 34222 CAGCTGACGGTC-GTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACG 34279 || || | || ||| || | ||||| || ||||| || ||||||||||| | || | Sbjct 5338564 GAG-TGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTG 5338622 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | || |||||||| ||||| ||| | || | | |||| || | |||||| Sbjct 5338623 GGATCCCT-TCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCA 5338681 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || || || || || || | |||||||||||||||||||| Sbjct 5338682 ACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 5338731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069224104800