Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq440 86.0 5e-12 seq664 84.2 2e-11 >seq440 Length=7283533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || ||||| || ||||||||||| ||| Sbjct 6972051 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCC 6972110 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | || || || || |||| || | || || ||| || Sbjct 6972111 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 6972170 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||| || | ||| ||||| | ||| | Sbjct 6972171 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCACT 6972230 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || |||||||||||||| || || || ||||| Sbjct 6972231 TCCAAGGTGATGGTCTTCCCGGTCAATGTTTTGACGAAGATCTGCAT 6972277 >seq664 Length=12074320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| |||||| || ||||| || ||||||||||| || ||| Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || || || || |||| | || || || ||| || Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| ||||| | ||| Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTT-TGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC 3113867 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| |||||||| || || ||||| || ||||| Sbjct 3113868 TTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379340740605225