Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_003387.1 Length=52797 Score E Sequences producing significant alignments: (Bits) Value seq334 228 3e-55 >seq334 Length=7771 Score = 228 bits (252), Expect = 3e-55 Identities = 276/377 (73%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 1078 TTTAAGAACGGCTCGCGCATCCTGTTCGGTGCCCGCGAGCGCGGGTTCGGCCGTGGGTTC 1137 || |||||||| |||||||| |||| ||||| |||||| || ||||| ||||||||| Sbjct 7150 TTCAAGAACGGTTCGCGCATTTTGTTTGGTGCTCGCGAGTCTGGCTTCGGTCGTGGGTTC 7091 Query 1138 GCCGGTGTCGACGTCCTGATTTTCGACGAGGCGCAGATCCTCACCGAGAACGCGATGGAC 1197 || || ||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 7090 GCGAAGGTGGACGTGCTGATCTTCGATGAGGCGCAGATCCTCACGGAGAAGGCCATGGAG 7031 Query 1198 GACATGGTGCCCGCGACGAACGCGGCGCCTAACCCGCTGATCCTGCTGGCCGGTACGCCA 1257 |||||||| || || ||||||||||| ||||| ||| | | || ||| || || Sbjct 7030 GACATGGTTCCGGCAACGAACGCGGCACCTAATGGTCTGGTGTTCATGATCGGCACTCCC 6971 Query 1258 CCGAAGCCGACGGACCCCGGCGAGGTGTTCACGGTGATGCGCCTCGAC---GCCCTGGCG 1314 ||| || |||||||| |||||||||||| | |||||||| ||| || ||| || Sbjct 6970 CCGCGCCCCACGGACCCGGGCGAGGTGTTCTC---GATGCGCCGGGACGCGGCACTGTCG 6914 Query 1315 GGCGACGTCGACNNNNNNNGGTACGTCGAGATTTCCGCCGACGAGGACGCCGACCCCGAC 1374 ||||| | | |||||| ||| | || ||||| ||||||| |||| ||| Sbjct 6913 GGCGAGGACCCGGACGTGATGTACGTGGAGCTGTCGGCCGATAAGGACGCGAACCCGGAC 6854 Query 1375 GACCGCTCGCAGTGGCGCAAGATGAATCCGAGCTACCCGCACCGGACGTCGGCCCGAGCG 1434 ||||| || |||||| ||| ||| ||| | ||||||||||||| | | ||| Sbjct 6853 GACCGTGCGGCGTGGCGGAAGGCGAACCCGTCGTTCCCGCACCGGACGGGTGAGGGCGCG 6794 Query 1435 ATCCTGCGTATGCGTAA 1451 ||| |||| ||||| || Sbjct 6793 ATCTTGCGCATGCGGAA 6777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168827386586390