Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq440 102 8e-17 seq393 86.0 6e-12 >seq440 Length=7283533 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| ||||| | ||| ||||| || || ||||| |||||| | Sbjct 6972963 CCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 6973022 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| |||||||||||| || || || |||| || | ||||| || || | Sbjct 6973023 AAAGT--TCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCG 6973080 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| || || ||| || ||| | | || | ||||| | | |||| Sbjct 6973081 GGATGCCTTCCTTATCCTGGATCTTCGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 6973140 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| ||||| | || |||||||| || ||||| Sbjct 6973141 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || ||||| || || || |||| || ||| Sbjct 661594 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCG 661535 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| ||||| ||||| || ||||| || ||||| ||||| | Sbjct 661534 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 661475 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | | ||| ||||| | || | |||||| Sbjct 661474 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAACGTGATAGTCTTG 661415 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || || ||||| || |||||| || Sbjct 661414 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 661382 >seq393 Length=11819561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || || || || | ||||||||||| || || Sbjct 8005308 GTCGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCGAGCTGCTTTCCG 8005367 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | |||||||| ||||| || ||||| ||||| ||| || ||| Sbjct 8005368 GCGAAGATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTA 8005427 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | ||||| ||||| | ||| Sbjct 8005428 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTT 8005487 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 8005488 TTCACAAAGATCTGCAT 8005504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059628436000