Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq320 109 8e-19 seq385 86.0 9e-12 >seq320 Length=3991519 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||| || | |||||||| || || || |||||| | | |||| | || Sbjct 317071 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 317012 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| |||| || || || || ||||| | ||| || || || || || || | ||||| Sbjct 317011 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTG-TGGATGCCAACAGCAACCCTCATTA 316953 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| |||||||| | ||| || | ||| || | ||| ||| | || | Sbjct 316952 GCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTTAAGAGGTACGATCTCTCAA 316893 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| || | ||| ||| || || ||||| || || Sbjct 316892 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGGTCGTAGATGAT 316844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 317408 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 317349 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || || || ||||||||| | ||||| |||||| || ||| Sbjct 317348 ATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGA 317289 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || ||||| || ||| || | || || ||| | || ||||| || Sbjct 317288 AACGCCAATACCCCCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 317229 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||||| ||||||||||| ||||| | ||||| ||||| Sbjct 317228 GCCCTCGATGCTATCATCTTTCATGCAGATCAGAAAGCAGCT 317187 >seq385 Length=11279646 Score = 86.0 bits (94), Expect = 9e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || ||||| || || || |||||| | ||||| | || Sbjct 380262 AGTTCCAGAATTGAAGAGAGTGGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 380203 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | ||||| || || ||||| | ||| ||||| || || | || | ||| | Sbjct 380202 GTAAGTTTGGATAGCGGAATCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATGA 380144 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCC 80511 |||||||||||| ||||||| | ||| | || | ||| || | ||| ||| | || Sbjct 380143 GCATGTGCTGAGGCCTTTCAATCA-CTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCG 380085 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 380084 AGTGTTTTGAATCCAAAGTAGTCATATTCAAAATCGCGATCATAAATGAT 380035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262470256200