Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq440 107 1e-18 seq664 98.7 8e-16 seq393 89.7 4e-13 >seq440 Length=7283533 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| |||||| || | |||||||||| | Sbjct 660928 CCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 660869 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || | ||| || ||||| || ||||| | ||| || || | || Sbjct 660868 AAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 660809 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | ||| ||||| || |||| |||| || || ||| |||||| ||| | | || Sbjct 660808 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGG-AGCTTTCAAC 660750 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||| || || ||||||||||| Sbjct 660749 CTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 >seq664 Length=12074320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || || |||| |||| ||||| ||||| || Sbjct 406658 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAA 406717 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||||| || || |||| | ||||||| | Sbjct 406718 AATCAATCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTGACATT 406777 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | ||||| || | ||||| || || || ||||| |||||||| Sbjct 406778 GTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 406837 Query 43098 AAAAATTTGCAT-TTTCTT 43115 || || ||||| |||||| Sbjct 406838 GAAGATCTGCATCTTTCTT 406856 >seq393 Length=11819561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || ||||| || | || |||||| || | ||||||||||| | Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||| || || ||||||| ||| || || | || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| | || || || | | |||||| ||| ||| || Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATAGTGTCG-GAGCTCTCAAC 8004544 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | ||||| || || |||||||| Sbjct 8004545 CTCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366323200890