Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq664 96.9 4e-15 seq440 96.9 4e-15 seq350 95.1 1e-14 >seq664 Length=12074320 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| |||| ||||||||| || |||| || ||||| || || ||||||||||| | Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || || || || |||||| | ||||| || ||||| Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | || | ||||| | | || ||| Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACT 3113868 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || |||||||| || || || || || |||||| || Sbjct 3113869 TCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCATACCT 3113919 >seq440 Length=7283533 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||||| ||| || || || || |||||||||||| | Sbjct 660928 CCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 660869 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| |||||||| || || || |||||| | ||||| || ||||| Sbjct 660868 AAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 660809 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || || ||| | | || | ||||| | | ||| || Sbjct 660808 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCAACC 660749 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| || || ||||| ||||||||| Sbjct 660748 TCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCATA 660701 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || ||||| | || || ||||| || |||||||| || Sbjct 6972278 GCCACCACGAAGACGGAGGACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGC 6972337 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 6972338 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 6972397 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 6972398 GATACCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCAC 6972457 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||||||||| || ||||| || |||||| Sbjct 6972458 CTCTAAAGTGATGGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCATA 6972506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| || || || || || |||||||||||| | Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || || || |||| ||||| ||||| || ||||| Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || ||| || | | || | ||||| | | || || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 661205 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 661204 TCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCATA 661157 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || || ||||| || |||||||| || || ||||| || || Sbjct 6972068 AACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTC 6972127 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || || || ||||| |||| ||||| ||||| || || || |||||||| ||||| Sbjct 6972128 AAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 6972187 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | ||||| | | || ||||| | || | ||||| Sbjct 6972188 GATCTTGGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATGGTCTT 6972247 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| ||||| || ||||| Sbjct 6972248 CCCGGTCAATGTTTTGACGAAGATCTGCAT 6972277 >seq350 Length=9129079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| || ||||| || || ||||||||||| Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCG 5338564 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| ||||| || || || | ||||| || |||||||| || || Sbjct 5338565 AGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGG 5338624 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | |||||||| | ||| || Sbjct 5338625 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAACC 5338684 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || || || ||||| || || || ||||| Sbjct 5338685 TCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 5338731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009931935600