Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq393 84.2 2e-11 seq440 82.4 6e-11 >seq393 Length=11819561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || ||||||||||| || ||||| || |||| || | | || || ||||| Sbjct 8005302 TGCAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCGAGCTGC 8005361 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || | || || |||||||||||| || | || || ||||| || || Sbjct 8005362 TTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTG 8005421 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | ||| || ||| |||| |||| ||| ||||| || || || Sbjct 8005422 GCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTG 8005481 Query 19019 AAAGTTTTGACAAAAATTTGCATTTTAAATC 19049 | |||||| ||||| || ||||| | ||||| Sbjct 8005482 AGAGTTTTCACAAAGATCTGCATCTGAAATC 8005512 >seq440 Length=7283533 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||||||| || |||||||| |||| ||| | |||| Sbjct 6972750 AAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCCAAAGTTCGGCCGTCT 6972809 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | || | ||||||||| ||| || | ||||| || || Sbjct 6972810 TCAAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 6972869 Query 18950 GCAATTTT 18957 |||||| Sbjct 6972870 TGAATTTT 6972877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569237912770