Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq664 134 3e-26 seq350 132 1e-25 seq393 127 5e-24 seq481 109 1e-18 seq510 86.0 1e-11 >seq664 Length=12074320 Score = 134 bits (148), Expect = 3e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || ||||| ||||| || |||| | || | Sbjct 3114610 AGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGG 3114669 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || ||||| || || || |||||||| ||||| ||||| || ||||| Sbjct 3114670 CCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCC 3114729 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGT 104518 || ||||||||||| ||||| || || || | ||| || ||| ||| ||||| || Sbjct 3114730 TTGTCCTGAATCTTAGCTTTAACGTTGTCAATGGTGTCAGAGCT---TTCCACCTCGAGG 3114786 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || || || || |||||||| Sbjct 3114787 GTGATTGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 3114827 >seq350 Length=9129079 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | ||| || | || | || ||||| ||||| || || || || | Sbjct 5338504 TCCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 5338563 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || || |||||||| ||||| || || || || || |||| ||| ||||| || || Sbjct 5338564 GAGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGG 5338623 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || ||||| ||||| || || ||||| || | || || | ||| || Sbjct 5338624 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAAC 5338683 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||| || || ||||| || || | ||||| ||||| ||||||||||| Sbjct 5338684 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || ||||| || || | || | || || |||||||| || || ||||||| | Sbjct 2564625 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCT 2564566 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| ||| || |||||||| || || || || || || |||||||||||||| ||| Sbjct 2564565 AGTGTTCGACCATCCTCTAGTTGCTTCCCTGCGAATATAAGTCTCTGTTGATCAGGTGGT 2564506 Query 104453 ATTCCTTCTTTATCCTG 104469 || || ||||| ||||| Sbjct 2564505 ATCCCCTCTTTGTCCTG 2564489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||| || || |||||| | || | ||| ||||| || |||| ||| Sbjct 8498786 GTCGAGTCATTCTTGATGTTGTAGTCACCCAATGTGCGACCATCTTCAAGATGTTCGCCA 8498845 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || ||||||||||||||||| || || Sbjct 8498846 GCAAAGATAAGCCTCTGCTGGTCCGGCGGAATGCCCTCTTTATCCTGAATCTTGGCCTTC 8498905 Query 104483 ACATTTTCTACGGTATC 104499 || ||||| | ||| || Sbjct 8498906 ACGTTTTCGATGGTGTC 8498922 >seq393 Length=11819561 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||||||| || ||||||| ||||||| Sbjct 8004603 AGCCTGAGGACGAGATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGG 8004662 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||| || || || | ||||| || || ||||| || || || Sbjct 8004663 CCATCTTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCC 8004722 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||||||||| || || || || || | ||| ||| || | || ||||| | || Sbjct 8004723 TTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCG-GAGCTCTCAACCTCCAAAGT 8004781 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || | || || ||||| |||||||| Sbjct 8004782 AATGGTCTTTCCCGTCAACGTCTTAACAAAGATCTGCAT 8004820 Score = 111 bits (122), Expect = 4e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| | || || || | ||||| |||||||| || || || || | Sbjct 4935801 TTCCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 4935860 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||| |||| || ||||| ||||| || || ||||| || |||||||||||||| || | Sbjct 4935861 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCTGGTG 4935920 Query 104451 GTATTCCTTCTTTATCCTG 104469 |||| |||||||| ||||| Sbjct 4935921 GTATACCTTCTTTGTCCTG 4935939 >seq481 Length=6868915 Score = 109 bits (120), Expect = 1e-18 Identities = 236/346 (68%), Gaps = 14/346 (4%) Strand=Plus/Plus Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004 ||| || ||||||||||| || || || || || || || |||||||||||||| | | Sbjct 949008 TTTCTATGGATTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACAGTCTCCTCCT 949067 Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT-----ATGAGA 269059 ||||| || || | || ||||| || | |||| || | |||| || | Sbjct 949068 CGATACGTACATCAAGGACAACAAAGAGAG----AGACCATCT-CTTCCGAGCAATCGAA 949122 Query 269060 ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG-ATAGCGC 269118 || || || || || ||| | | ||||| |||| ||||| ||| || | Sbjct 949123 ACCATCCCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGACGGATCTCAG 949182 Query 269119 GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT- 269177 |||| || ||||| | | ||||| ||| || |||||||| ||||| || || Sbjct 949183 ACCTT-CGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAG 949241 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTA 269237 ||| ||| | ||||| ||| ||||||| |||| || ||||| ||||| || ||||| | Sbjct 949242 CTTCTGCT-CGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGATTGACCTTCTCCA 949300 Query 269238 ACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||| ||||| | || ||||| ||||||||||| ||||| || Sbjct 949301 ACGAGTTGATCTCTCGAGATGAAGGCTTACACTGCGATTTCGCCTG 949346 >seq510 Length=7398753 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || ||||| || || || ||||| || | ||| ||||| ||| ||| Sbjct 3504901 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCGCTGCTTTCGACC 3504960 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 3504961 TCGAGAGTGATGGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATTTT 3505010 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/139 (73%), Gaps = 10/139 (7%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAG--------- 104412 ||| || ||||||||||| ||||| || | || ||| | ||| ||||| || Sbjct 7059207 TGTTGACTCTTTCTGAATGTTATAATCCGCTAAAGTCCGACCATCTTCGAGCTGCCTCGA 7059148 Query 104413 -TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 |||||| ||| |||| || || |||||||| || || | || ||||| || || || Sbjct 7059147 GTTGTTTACCATCAAATATGAGTCTCTGTTGGTCTGGTGCGATACCTTCCTTGTCATGGG 7059088 Query 104472 TCTTTGCTTTTACATTTTC 104490 |||||||||||||||||| Sbjct 7059087 CCTTTGCTTTTACATTTTC 7059069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387999634140