Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq393 113 4e-20 seq440 111 1e-19 seq664 102 7e-17 >seq393 Length=11819561 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| |||||||| |||||||| || | || || |||||||| ||| || | Sbjct 8005313 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCGAGCTGCTTTCCGGCGAA 8005372 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||||||| || | || |||||||||| || || |||| | | Sbjct 8005373 GATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTG-GCTTTAACGT 8005431 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| |||| |||| ||||| || ||||| || |||||||||||||||| Sbjct 8005432 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCA 8005491 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 8005492 CAAAGATCTGCATC 8005505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || || | | ||| |||||||||||||| Sbjct 357009 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGCCCGTCCTCCAGCTGC 357068 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || | |||||| ||| || | | |||||||||| || ||| Sbjct 357069 TTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTC 357128 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | || || ||||| || || || || || || Sbjct 357129 GCCTTCACATTGTCGATCGTGTCCGAGGATTCGACCTCGAGGGTGATTGTCTTCCCCGTT 357188 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 357189 AGGGTTTTCACGAAGATCTGCATC 357212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| ||||||||||| || || || || | ||||| Sbjct 8003928 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCCTCA 8003987 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | | ||||||||| | Sbjct 8003988 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGA 8004047 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| |||| ||| | || ||||| ||| Sbjct 8004048 ATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCTTA 8004107 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||| ||||||||||| Sbjct 8004108 CCGGTCAAGGTCTTCACGAAAATCTGCAT 8004136 >seq440 Length=7283533 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || || ||||||||| |||||| || |||||||||||||| Sbjct 660473 ACCACCACGGAGCCTTAGAACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGC 660414 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| || ||||| ||| || | || | | |||||||||| || Sbjct 660413 CAAGGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 660354 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || |||||||||| || || |||| | | | | ||||| || | ||| Sbjct 660353 AATACCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 660295 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || ||||||||||| || || || ||||||||| Sbjct 660294 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 660245 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | ||||| || ||||| || |||||| |||||||||||||| || Sbjct 661385 ACCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGC 661326 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| ||| || | || | ||||||||| ||| || Sbjct 661325 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 661266 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||| ||| || || ||||| | | || ||||| || | ||| Sbjct 661265 GATACCTTCCTTATCCTGGATCTTTGCCTTGACGTTGTCG--ATGGTGTCAGAGCTCTCG 661208 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || || | ||| || || || |||||||| Sbjct 661207 ACCTCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||| || |||||| || |||||||| ||||| Sbjct 660701 ACCACCACGTAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 660642 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| |||| || || ||||| ||| | | || || | |||||| ||| || Sbjct 660641 GAGAGTTCGGCCGTCTTCGAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 660582 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||||| ||| || ||||| | | || ||||| || | | |||| Sbjct 660581 GATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAACTCTCC 660524 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||||||||| || || || |||||||| Sbjct 660523 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| |||||| || ||||||||||| ||||| ||| |||| || Sbjct 6972981 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGACCGTCTTCG 6973040 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || | | |||||| ||| ||| | | |||||| ||| Sbjct 6973041 AGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 6973100 Query 48638 ATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| |||| | | | | ||||| || | ||| ||||| || || || || Sbjct 6973101 ATCTTC-GCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTT 6973159 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||| || || || ||||||||| Sbjct 6973160 TCCGGTGAGAGTCTTTACGAAGATCTGCATC 6973190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || || ||| || || |||||||| ||||||||| || | ||||| Sbjct 6972297 ACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCG 6972356 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | || |||||||||| Sbjct 6972357 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 6972416 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| |||| ||| | || ||||| || Sbjct 6972417 ATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAAAGTGATGGTCTTC 6972476 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || || || ||||||||||| Sbjct 6972477 CCGGTCAATGTCTTAACGAAAATCTGCAT 6972505 >seq664 Length=12074320 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||| || |||||| || || ||||||||||| Sbjct 3114600 ACCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 3114659 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || |||| ||||||||||| ||| || | || | | |||||||||| || Sbjct 3114660 CAATGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGG 3114719 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||||||| ||| || |||| | | | | ||||| || | ||| Sbjct 3114720 AATGCCTTCCTTGTCCTGAATCTT-AGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCCA 3114778 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || ||||||||||| || || || ||||||||| Sbjct 3114779 CCTCGAGGGTGATTGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 3114828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | || || || ||||| || ||||| ||||||||||||||||| Sbjct 3113688 ACCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGC 3113747 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| || || | || || | |||||| ||| || Sbjct 3113748 CAAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGG 3113807 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | ||||||||| ||||| ||| | |||| | ||||| |||| || Sbjct 3113808 GATGCCTTCCTTGTCTTGGATTTT-GGCT---TTGACGTTGTCAATGGTGTCGGAGCTCT 3113863 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || |||||||| ||||| | ||| |||||||| |||||||| Sbjct 3113864 CCACTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247580530705