Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq510 125 4e-24 seq396 116 2e-21 seq186 113 2e-20 seq442 109 3e-19 seq413 109 3e-19 seq385 107 1e-18 seq481 102 4e-17 seq320 100 1e-16 seq228 96.9 2e-15 >seq510 Length=7398753 Score = 125 bits (138), Expect = 4e-24 Identities = 84/93 (90%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 474397 AAAAACAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 474338 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 ||| |||||||||||||||||||| ||| |||| Sbjct 474337 TCTAACCAACTGAGCTAATGGGCCATCG-CGAT 474306 >seq396 Length=12270481 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 206461 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 206402 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 206401 CAACTGAGCTAATGGGCC 206384 >seq186 Length=9101398 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 5125566 AAACAAAAAAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 5125507 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 5125506 GCTCTAACCAACTGAGCTAATGGGCC 5125481 >seq442 Length=8882589 Score = 109 bits (120), Expect = 3e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 3963609 AAAATATAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 3963551 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 3963550 TCTAACCAACTGAGCTAATGGGCC 3963527 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | || ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 4066506 AAAAAATAAGAAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 4066447 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 4066446 CGCTCTAACCAACTGAGCTAATAGGCC 4066420 >seq413 Length=15208799 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1899273 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1899214 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1899213 TGAGCTAATGGGCC 1899200 Score = 109 bits (120), Expect = 3e-19 Identities = 83/98 (85%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||||||| ||| | ||| ||||||||| | | |||||||| |||||||||||| Sbjct 4380827 AGAATTAAAAAATAGGTAAAGTGTTGGCCCATTCAGGTTTCGAACCTGCGACCTTCGCGT 4380886 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 4380887 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4380924 >seq385 Length=11279646 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||| |||| | | |||||||| |||||||||||||||||||||||| Sbjct 638157 AAAAAATATATATGGCACATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 638098 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 638097 GCTCTAACCAACTGAGCTAATGGGCC 638072 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 8534354 TAAAAACAAAAACTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 8534413 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||| ||||||||||||||| |||| || Sbjct 8534414 CGCTCTAACCAACTGAGCTAATAGGCCATC 8534443 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 6164089 AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 6164148 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 6164149 CAACTGAGCTAATAGGCCG 6164167 >seq481 Length=6868915 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1425416 AAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1425357 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1425356 CAACTGAGCTAATAGGCC 1425339 >seq320 Length=3991519 Score = 100 bits (110), Expect = 1e-16 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||||||| || | | |||||||| ||||||||||||||||||||||||| Sbjct 548318 AAAAAGAAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 548259 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| ||||||||||||||| |||| || Sbjct 548258 TCTAACCAACTGAGCTAATAGGCCATC 548232 Score = 95.1 bits (104), Expect = 6e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 524080 AAACTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 524139 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 524140 CAACTGAGCTAATAGGCCATC 524160 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 534253 AAAAAAAAATACTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 534194 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| ||||||||||||||| |||| || Sbjct 534193 GCTCTAACCAACTGAGCTAATAGGCCATC 534165 Score = 95.1 bits (104), Expect = 6e-15 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||||| ||||| | ||||| || | | |||||||| ||||||||||||| Sbjct 540364 TAGAATTAA--AAAAACC----TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTA 540311 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 540310 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 540275 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 461033 TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 461092 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 461093 CTGAGCTAATAGGCC 461107 >seq228 Length=2719846 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||| || | | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 653614 AATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 653555 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 653554 AACTGAGCTAATAGGCC 653538 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||| || | | |||||||| ||||||||||||||||||||||||| Sbjct 653780 AAAACAAAAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 653721 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| ||||||||||||||| |||| || Sbjct 653720 TCTAACCAACTGAGCTAATAGGCCATC 653694 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 653450 TTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 653391 Query 11515 CTGAGCTAATGGGCCGTC 11532 |||||||||| |||| || Sbjct 653390 CTGAGCTAATAGGCCATC 653373 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488953218580