Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq413 163 4e-36 seq186 158 2e-34 seq664 147 3e-31 seq393 136 6e-28 >seq413 Length=15208799 Score = 163 bits (180), Expect = 4e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || ||||| |||||||||||||| ||| Sbjct 2331491 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGCCGTCTTGCTCGTCGTGGTGGCGTC 2331432 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| | | || | |||||||| ||| || Sbjct 2331431 AAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTTCTCGAG 2331372 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || || ||| ||||||||||| | ||||| |||||| || Sbjct 2331371 AATGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCAGGAAGACCGTCACCGCC 2331312 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||||||||| ||||| || ||||| |||| | || ||||| || ||||| Sbjct 2331311 ATGGATGTCGTCTATGCTTTGAAGCGCCAAGGGCGTACCTTGTACGGTTTCGGTGGTTAA 2331252 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||| || || || ||||| ||||| |||||||| ||| Sbjct 2285084 GATAACATCCAAGGTATCACTAAGCCTGCCATTCGCCGTCTCGCTCGCCGTGGTGGCGTC 2285143 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| | | || | |||||||||||| || Sbjct 2285144 AAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 2285203 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || || ||| ||||||||||| || ||||| |||||| || Sbjct 2285204 AATGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC 2285263 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| ||||| || ||||| |||| | || ||||| || ||||| Sbjct 2285264 ATGGATGTTGTCTATGCTTTGAAGCGCCAAGGACGTACCTTGTACGGTTTCGGCGGTTAA 2285323 >seq186 Length=9101398 Score = 158 bits (174), Expect = 2e-34 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || ||||| | ||||||||| | ||||||| Sbjct 6466374 GAGACAACATCCAAGGAATCACCAAGCCGGCGATCCGGAGGCTGGCTCGTAGAGGTGGAG 6466433 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 6466434 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 6466493 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| |||| ||| || || ||| ||||||||||| | | |||||||||||| Sbjct 6466494 AAAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 6466553 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||||||||| | || | ||||| | | | | || || || || ||| Sbjct 6466554 CCATGGACGTCGTCTATGCGCTCAAGAGGCAAGGGAGGACGCTCTACGGCTTCGGCGGTT 6466613 Query 16698 AA 16699 || Sbjct 6466614 AA 6466615 Score = 152 bits (168), Expect = 8e-33 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||||||||||||||| || || ||||| | ||||||||| | ||||||| Sbjct 1588831 GAGACAACATCCAAGGAATCACCAAACCGGCGATCCGGAGGCTGGCTCGTAGAGGTGGAG 1588772 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 1588771 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 1588712 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| ||| || ||| ||||||||||| | | |||||||| ||| Sbjct 1588711 AGAATGTCATCCGTGACGCTGTCACCTACACCGAGCACGCCAGGAGGAAGACTGTTACCG 1588652 Query 16638 CCATGGATATCGTCTATGC 16656 ||||||| |||||||||| Sbjct 1588651 CCATGGACGTCGTCTATGC 1588633 >seq664 Length=12074320 Score = 147 bits (162), Expect = 3e-31 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | ||| |||| ||||||||||||||||| ||||| || || Sbjct 6661188 GCGAAGCGTCACAGGAAAGTTCTGAGAGACAACATCCAAGGAATCACAAAGCCGGCGATT 6661129 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || || ||||||||| || || ||| |||| ||||||| Sbjct 6661128 CGGCGTTTGGCTCGTAGAGGAGGCGTCAAGCGTATCAGCGGGTTGATCTACGAAGAGACA 6661069 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||| | ||| ||| |||| ||| || || || |||||| Sbjct 6661068 CGTGGCGTCCTCAAGATCTTCTTGGAGAACGTCATCCGTGACGCCGTCACATACACCGAG 6661009 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | ||||| |||||| |||||||| |||| ||||| Sbjct 6661008 CACGCGCGGAGGAAGACGGTCACCGCCATGGATGTCGTTTATGC 6660965 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||| ||||||||||||| || || || ||| |||||||| | || || | Sbjct 6663172 GAGACAACATCCAAAGAATCACCAAGCCTGCGATTCGGCGTTTGGCTCGTAGAGGAGGCG 6663113 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || ||| |||| ||||||| |||| || | ||||||||| | Sbjct 6663112 TCAAGCGTATCAGCGGCTTGATCTACGAAGAGACACGTGGCGTCCTCAAGATCTTCTTGG 6663053 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || || || ||||||||||| | ||||| ||||| Sbjct 6663052 AGAACGTCATCCGCGACGCCGTTACA-TACACCGAGCACGCGCGGAGGAAGACGGTCACT 6662994 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| | || | ||||| | | | || || || ||| || Sbjct 6662993 GCCATGGATGTTGTTTATGCTCTCAAGAGGCAAGGAAGAACTCTCTACGGATTCGGAGGT 6662934 Query 16697 TAA 16699 ||| Sbjct 6662933 TAA 6662931 >seq393 Length=11819561 Score = 136 bits (150), Expect = 6e-28 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || | |||||||||||| | || || | Sbjct 7776623 GAGACAACATCCAAGGAATCACAAAGCCTGCGATAAGGCGTCTGGCTCGTAGAGGAGGCG 7776682 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| ||| |||| ||||||| | | |||||||||||||| ||| Sbjct 7776683 TGAAGAGGATCAGTGGTTTGATCTACGAAGAGACGAGAGGAGTTTTGAAGATCTTTCTCG 7776742 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| || ||| | || || |||||||| | | |||||||| || Sbjct 7776743 AGAATGTTATTAGAGACGCTGTGACTTACACTGAGCACGCGAGGAGGAAGACTGTTACGG 7776802 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | || || || ||||| | ||||| |||| ||||||| || || Sbjct 7776803 CCATGGATGTTGTTTACGCCTTGAAGAGGCAAGGACGTACTCTTTATGGATTCGG 7776857 Score = 120 bits (132), Expect = 5e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || || || ||||| || || |||||| | || | | ||| Sbjct 4054397 CTCCGAGACAACATCCAGGGGATTACGAAGCCGGCGATTCGTCGTTTAGCGAGAAGAGGT 4054456 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || ||| |||| || |||| ||| | |||| | ||||||||| Sbjct 4054457 GGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTTAAGATCTTC 4054516 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || || | || || || || || ||||||||| || ||||||||| Sbjct 4054517 CTCGAGAATGTGATTCGCGACGCCGTCACTTACACTGAGCACGCTCGCCGGAAGACTGTC 4054576 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || | |||||| | ||||| || ||||| Sbjct 4054577 ACGGCGATGGATGTTGTCTACGCGTTGAA 4054605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074555413565