Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq393 98.7 1e-15 seq664 89.7 5e-13 >seq393 Length=11819561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | |||||| |||| | || | Sbjct 8005504 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCC 8005445 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 8005444 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 8005385 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | || ||| || || |||||||||| | || | || ||||| || Sbjct 8005384 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGCCG-GACTTTGGCTGACTACAA 8005326 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || ||| | ||||| || || || ||| | || || Sbjct 8005325 CATCCAAAAGGAGTCGACTTTGCATCTCGTTCTCAGGCTTCGTGGTGG 8005278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || || | | ||| || ||||| ||| Sbjct 4935936 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 4935877 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| | | ||| || || ||||| || ||||| |||||| | || || ||| | Sbjct 4935876 GATGGCCGAACCCT-AGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTCGTCTT 4935818 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 4935817 GAGGCTCAGAGGTGGAA 4935801 >seq664 Length=12074320 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 26761 CAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 |||| ||| ||||| | || || ||||| |||| || || | || ||| |||| | Sbjct 406858 CAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTC 406799 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 ||||| |||||||||||| | |||||| ||||| ||||| |||||||| || Sbjct 406798 GAATCCTCCGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGGATCCCA 406739 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 || || || || || | |||| || ||| ||||| || ||||| | | | || | Sbjct 406738 CCGGACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGCACGCTCGCC 406679 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || || || | ||||| || || Sbjct 406678 GACTACAACATCCAGAAGGAGTCGACGCTTCATCTCGTGCT 406638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658181787600