Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq393 98.7 9e-16 seq350 98.7 9e-16 seq664 95.1 1e-14 seq440 95.1 1e-14 >seq393 Length=11819561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||| | | ||| |||||||| ||| Sbjct 4935936 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 4935877 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| | | ||| ||||| ||||| || ||||| ||||| |||| | || || Sbjct 4935876 GATGGCCGAACCCT-AGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTCGTCTT 4935818 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 4935817 GAGGCTCAGAGGTGGA 4935802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| |||| || ||| | | Sbjct 8005504 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCC 8005445 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 8005444 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 8005385 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||| ||||| |||||||||| | | || | || || || || Sbjct 8005384 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGCCG-GACTTTGGCTGACTACAA 8005326 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| || || || Sbjct 8005325 CATCCAAAAGGAGTCGAC 8005308 >seq350 Length=9129079 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || |||||||| | ||||| ||||| ||||| || || |||| ||| | || || || Sbjct 5338737 AAGAAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTTGAA 5338678 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | ||||| ||||| | || || ||||| ||||| ||||| || || || Sbjct 5338677 TCGTCGGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCACCG 5338618 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||| | ||||| | || ||| |||||||| ||||| | || | || ||| Sbjct 5338617 GATCAGCAGCGGCTGATATTCGCCGGGAAGCAACTTGAAGACGGAAGGACACTCGCGGAT 5338558 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || ||||| || |||| || || | | ||||||||||| Sbjct 5338557 TACAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTTCGTCTGAGAGGAGGA 5338504 >seq664 Length=12074320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 23983 CAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||| ||| ||||| | || || ||||| |||| || || | || ||| |||| ||| Sbjct 406858 CAAAGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTC 406799 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 || || |||||||||||| | |||||| ||||| ||||| ||||| || || Sbjct 406798 GAATCCTCCGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGGATCCCA 406739 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 || || || ||| || |||||| || ||| || || || ||||| | | | | || | Sbjct 406738 CCGGACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGCACGCTCGCC 406679 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || || || || ||||| | ||| Sbjct 406678 GACTACAACATCCAGAAGGAGTCGACGCTTCATCTCGTG 406640 >seq440 Length=7283533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || |||||| | ||||| | || || || | | Sbjct 660702 ATGCAAATTTTCGTCAAGACTTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGCTCC 660761 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||||| |||||||| || || ||||| || || Sbjct 660762 GACACCATTGACAACGTTAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCAG 660821 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||||||||| || | | | | | |||||| ||| Sbjct 660822 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACCTTGGCCGATTACAAC 660881 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || || || || ||| ||||||| || || Sbjct 660882 ATCCAGAAGGAGTCCACACTTCATTTGGTCTT 660913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | ||||| |||| |||||| | Sbjct 661158 ATGCAGATCTTCGTTAAGACTTTGACGGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 661217 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || ||||| || ||||| || || Sbjct 661218 GACACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAG 661277 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| |||| | | | | |||||| ||| Sbjct 661278 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 661337 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || || || || |||| || ||||| Sbjct 661338 ATTCAGAAGGAGTCAACCCTTCACTTGGTGTT 661369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| |||| || || | Sbjct 660246 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCT 660305 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 660306 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 660365 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||||||||| || | | | | | | ||||| ||| Sbjct 660366 CAGAGGCTTATCTTCGCCGGAAAGCAACTCGAGGACGGCCGTACCTTGGCTGATTACAAC 660425 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || || || || ||| |||| || || |||| Sbjct 660426 ATCCAGAAGGAGTCCACACTTCACTTGGTTCTAAG 660460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932305909275