Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq440 96.9 3e-15 seq393 96.9 3e-15 seq664 89.7 4e-13 >seq440 Length=7283533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| ||| || ||||||||||| || |||||||| |||||| Sbjct 660928 CCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 660869 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | ||| || || || | || | || ||| |||||| ||| Sbjct 660868 AAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 660809 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | | |||||| | || Sbjct 660808 ATACCCTCTTTGTCTTGGATCTTGGCT--TTAACGTTGTCAATGGTGTCGGAGCTTTCAA 660751 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||||||||| |||| || ||||| ||||| ||||| Sbjct 660750 CCTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || || ||||| || || ||||||||||| ||| Sbjct 6972051 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCC 6972110 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || | || || ||||| |||||| || Sbjct 6972111 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 6972170 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | | |||||| | |||| Sbjct 6972171 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCAATGGTGTCGGAGCTCTCCA 6972228 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || ||||||| |||||||| || |||||||| Sbjct 6972229 CTTCCAAGGTGATGGTCTTCCCGGTCAATGTTTTGACGAAGATCTGCAT 6972277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 660700 CCACCACGTAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 660641 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | ||| || || ||| | || | || ||| |||||| || Sbjct 660640 AGAGTTCGGCCGTCTTCGAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 660581 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | ||| || | | | | ||||| |||| Sbjct 660580 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACC 660521 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| |||||||| || || || || || |||||||| Sbjct 660520 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || ||||||||||| || |||||||| || ||| Sbjct 660472 CCACCACGGAGCCTTAGAACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCC 660413 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||| || || || | ||||||| ||| || ||| ||| Sbjct 660412 AAGGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 660353 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | ||||| | ||| Sbjct 660352 ATACCTTCCTTGTCCTGGATCTTGGCT--TTAACGTTGTCGATGGTGTCAGAGCTTTCCA 660295 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || |||||||| || || || || || |||||||| Sbjct 660294 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || |||||||||||||| || |||||||| |||||| Sbjct 6972963 CCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 6973022 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| || | || || || || | ||||||| ||| |||||| || Sbjct 6973023 AAAGTTCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 6973082 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || ||| || || | | | | ||||| | ||| Sbjct 6973083 ATGCCTTCCTTATCCTGGATCTTCGCT--TTAACGTTGTCGATGGTGTCAGAGCTTTCCA 6973140 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || |||||||| || || || || || |||||||| Sbjct 6973141 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 >seq393 Length=11819561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||||| || ||||||||||| ||||||||||| ||| Sbjct 8005278 CCACCACGAAGCCTGAGAACGAGATGCAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 8005337 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || || | || |||| ||| || ||| ||| Sbjct 8005338 AAAGTCCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGG 8005397 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | |||| Sbjct 8005398 ATACCTTCCTTGTCCTGGATCTTGGCT--TTAACGTTGTCGATGGTGTCGGAGCTCTCCA 8005455 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| |||||||| || ||||| ||||| |||||||| Sbjct 8005456 CCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 8005504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| | || ||||||||||| ||||||||||||||| Sbjct 8004822 CCACCACGAAGCCTGAGAACGAGATGTAAAGTCGACTCCTTTTGGATGTTGTAGTCGGCC 8004881 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || || | || | | ||| |||||| ||| Sbjct 8004882 AAGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004941 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | ||||||| | ||| Sbjct 8004942 ATACCCTCCTTGTCCTGGATCTTAGC--CTTGACGTTATCAATAGTGTCGGAGCTCTCAA 8004999 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| |||||||||| || |||||||| |||||||| Sbjct 8005000 CCTCCAAAGTAATGGTCTTTCCGGTCAATGTCTTGACAAAGATCTGCAT 8005048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||| Sbjct 8003925 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCC 8003984 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || || ||||| |||||| ||| | ||| || ||||| Sbjct 8003985 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCT 8004044 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | |||||| | |||| || | |||||||| Sbjct 8004045 TGAATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTC 8004104 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || ||||||||||| Sbjct 8004105 TTACCGGTCAAGGTCTTCACGAAAATCTGCAT 8004136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| | || ||||||||||| ||||||||||| ||| Sbjct 8005050 CCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCC 8005109 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || || | || | || ||| |||||| ||| Sbjct 8005110 AAAGTCCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 8005169 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 8005170 ATACCCTCCTTGTCCTGGATCTTAGC--CTTTACGTTGTCGATGGTGTCGGAGCTCTCAA 8005227 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || ||||||||||| || || ||||| |||||||| Sbjct 8005228 CCTCCAAAGTAATCGTCTTTCCGGTCAGGGTCTTAACAAAGATCTGCAT 8005276 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || ||||| |||||||| || |||||||||||||| Sbjct 356985 CCTCCACGGAGACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 357044 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || || || || | || | | ||| |||||| ||| Sbjct 357045 AGTGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGG 357104 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | | |||||| | | | | ||||| || || Sbjct 357105 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGAGGATTCGACC 357164 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | |||||| || || || || || ||||| || || |||||||| || Sbjct 357165 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 357214 >seq664 Length=12074320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 ||||| || || ||||| || || | ||| || || |||||||| || ||||||||||| Sbjct 3114371 TACCC-CCACGGAGCCTGAGGACGAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCA 3114429 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 || | ||| | |||| || | || ||||| || | || | || ||| |||||| Sbjct 3114430 GCGAGAGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGT 3114489 Query 16826 GGCACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| ||||| || || ||| || || | | | | |||||| | | Sbjct 3114490 GGGATACCCTCCTTGTCTTGAATCTTAGCT--TTGACGTTGTCAATGGTGTCGGAGCTTT 3114547 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||| || ||||| ||||| |||| ||| || |||||||||||||| Sbjct 3114548 CAACCTCCAAAGTAATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3114599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| ||||| | || |||| || || || || ||||| || |||||||| || ||| Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || || | || | || ||| |||||| ||| Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| |||| ||| || || | | | | |||||| | |||| Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTTTGGCT--TTGACGTTGTCAATGGTGTCGGAGCTCTCCA 3113866 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||| ||||||| || || ||||| |||||||| Sbjct 3113867 CTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084519407950