Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq320 104 3e-17 seq385 86.0 8e-12 >seq320 Length=3991519 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | |||||||| || ||||| |||||| | | || | | || Sbjct 317071 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 317012 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| |||| || || || || ||||| | ||| || || || || || || | ||||| Sbjct 317011 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTG-TGGATGCCAACAGCAACCCTCATTA 316953 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || | Sbjct 316952 GCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTTAAGAGGTACGATCTCTCAA 316893 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| || | ||| ||| || || ||||| || || Sbjct 316892 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGGTCGTAGATGAT 316844 >seq385 Length=11279646 Score = 86.0 bits (94), Expect = 8e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | || ||||| || ||||| |||||| | ||| | | || Sbjct 380262 AGTTCCAGAATTGAAGAGAGTGGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 380203 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||||| || || ||||| | ||| ||||| || || | || | ||| | Sbjct 380202 GTAAGTTTGGATAGCGGAATCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATGA 380144 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCC 63643 |||||||||||| ||||||| | ||| | || | ||| || | ||| ||| | || Sbjct 380143 GCATGTGCTGAGGCCTTTCAATCA-CTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCG 380085 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 380084 AGTGTTTTGAATCCAAAGTAGTCATATTCAAAATCGCGATCATAAATGAT 380035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626416118000