Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq664 122 8e-23 seq440 109 5e-19 seq393 105 6e-18 seq350 96.9 3e-15 >seq664 Length=12074320 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| ||| ||||||| | ||||||||| || Sbjct 3113915 ATGCAGATCTTTGTGAAGACTTTGACCGGGAAAACCATCACTCTAGAAGTGGAGAGCTCC 3113856 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||||| ||||| ||||| || || || || Sbjct 3113855 GACACCATTGACAACGTCA---AAGC-CAAAATCCAAGACAAGGAAGGCATCCCTCCGGA 3113800 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || || || || | || |||| |||||| ||| ||||| Sbjct 3113799 CCAGCAGAGGTTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCTGATTA 3113740 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| || ||||| || || || || || | | ||| | ||||| Sbjct 3113739 CAACATTCAGAAGGAATCGACCCTTCACTTGGTTTTGCGTCTACGTGGAGG 3113689 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||||||||||||||| ||||||| | || |||||| || Sbjct 3113687 ATGCAGATCTTTGTAAAGACTTTGACCGGTAAGACCATCACTCTAGAGGTGGAGAGCTCC 3113628 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||||| ||||| ||||| || || || || Sbjct 3113627 GACACCATTGACAACGTCA---AAGC-CAAAATCCAGGACAAGGAAGGCATCCCTCCGGA 3113572 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || || || | || |||| ||||||| ||| || || Sbjct 3113571 CCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCTGACTA 3113512 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || || || || || Sbjct 3113511 CAACATCCAGAAGGAATCGACCCTTCACTTGGTCCT 3113476 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || ||| ||||||| | || |||||| || Sbjct 3114143 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAAACCATCACTCTAGAGGTGGAGAGCTCC 3114084 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||||| ||||| ||||| || || || || Sbjct 3114083 GACACCATTGACAACGTCA---AAGC-CAAAATCCAGGACAAGGAAGGCATCCCTCCGGA 3114028 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || || || || | || |||| ||||||| ||| || || Sbjct 3114027 CCAGCAGAGGTTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCTGACTA 3113968 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || || || || | | ||| | ||||| Sbjct 3113967 CAACATCCAGAAGGAATCGACCCTTCACTTGGTCTTGCGTCTACGTGGAGG 3113917 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || | ||||| |||| ||||| ||| Sbjct 3114827 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACAATCACCCTCGAGGTGGAAAGCTCT 3114768 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | |||| || | ||| ||||| ||||| ||||| || || || Sbjct 3114767 GACACCATTGACAACGTTAAAGCTAAGATTCAG-GACAAGGAAGGCATTCCTCCGGATCA 3114709 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || || | ||||| | ||||| ||| |||||||| Sbjct 3114708 GCAGAGGCTCATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGCACATTGGCTGATTACAA 3114649 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || || || || || ||| | || || ||||| Sbjct 3114648 TATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCAGGCT 3114610 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || | ||||| | || || || || Sbjct 3114371 ATGCAAATCTTCGTTAAAACCTTGACTGGCAAGACTATCACTTTGGAGGTCGAAAGCTCC 3114312 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| || || ||||| || || || |||| Sbjct 3114311 GACACCATCGA--CAATGTTAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCGGACC 3114254 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || || || ||||| || | || |||| |||||| ||| |||||||| Sbjct 3114253 AGCAAAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACA 3114194 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||| || || || || || || || || || Sbjct 3114193 ATATCCAGAAGGAGTCTACCCTTCACTTGGT 3114163 >seq440 Length=7283533 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || |||| || |||| || ||| ||| Sbjct 661158 ATGCAGATCTTCGTTAAGACTTTGACGGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 661217 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| || || ||||| || || || ||||| Sbjct 661218 GACACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAG 661277 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| |||||| ||| ||||||||| Sbjct 661278 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 661337 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| || || || || || || || ||| Sbjct 661338 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 661367 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || |||| || |||| || ||| ||| Sbjct 660930 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACCATTACCCTCGAGGTCGAGAGCTCT 660989 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| |||||||| || || || || || Sbjct 660990 GACACAATTGACAACGTCA---AGGCTAAGATTCA-AGACAAAGAGGGTATCCCCCCGGA 661045 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || ||||| || ||| | || |||| ||| || ||| |||||| Sbjct 661046 CCAGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCTTGGCCGATTA 661105 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || || ||||| || ||||| || Sbjct 661106 CAACATCCAGAAGGAGTCCACACTTCATTTGGT 661138 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| | || || |||| |||||| || Sbjct 661614 ATGCAGATTTTCGTGAAGACCTTGACCGGTAAGACGATAACCCTCGAGGTGGAGAGTTCC 661673 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 661674 GACACAATTGA-TAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCA 661732 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || || || | || |||| |||||| | | ||| ||||| Sbjct 661733 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTAGCCGACTACAA 661792 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 661793 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 661825 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| |||| || | || || || || Sbjct 660702 ATGCAAATTTTCGTCAAGACTTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGCTCC 660761 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | |||| || ||| |||||||| || || || || ||||| Sbjct 660762 GACACCATTGACAACGTTAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCA 660820 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || ||| | || || | || || ||| ||||||||| Sbjct 660821 GCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACCTTGGCCGATTACAA 660880 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || ||||| || ||||| || Sbjct 660881 CATCCAGAAGGAGTCCACACTTCATTTGGT 660910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| || ||| || Sbjct 6972733 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGAGCTCA 6972674 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| |||| || ||||||||||| || || || || Sbjct 6972673 GATACTATCGACAACGTCA---AAGCTAAAATCCAG-GACAAAGAAGGTATCCCCCCGGA 6972618 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || || || || || | || |||| |||||| ||| || || Sbjct 6972617 CCAGCAGAGATTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTA 6972558 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || || || || Sbjct 6972557 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6972522 >seq393 Length=11819561 Score = 105 bits (116), Expect = 6e-18 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| || Sbjct 8004136 ATGCAGATTTTCGTGAAGACCTTGACCGGTAAGACCATCACTCTAGAGGTGGAGAGCTCC 8004077 Query 25059 GACACTATCGAGTCAC-TGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || |||| || || | ||| ||||| ||||| ||||| || |||| Sbjct 8004076 GACACCATTGA-TAACGTGAAGGCCAAGATTCA-AGACAAGGAAGGCATTCCTCCGGACC 8004019 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || || || | || |||| |||||| | | ||| |||| Sbjct 8004018 AGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTAGCCGACTACA 8003959 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || || || || || Sbjct 8003958 ACATTCAGAAGGAGTCGACCCTTCACTTGGTCCT 8003925 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||||||||| |||| || | || || ||| || Sbjct 8004364 ATGCAGATCTTTGTGAAGACTTTGACCGGTAAGACCATTACTCTAGAGGTTGAGAGCTCA 8004305 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| |||||| ||||| || || ||||| || ||| Sbjct 8004304 GACACCATCGA--CAATGTCAAAGC-CAAAATCCAGGACAAGGAGGGCATTCCTCCGGAC 8004248 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | || |||| |||||| | | ||| ||| Sbjct 8004247 CAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTAGCCGACTAC 8004188 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || || || || || || || || ||| || Sbjct 8004187 AACATCCAGAAGGAGTCTACACTTCACTTGGTGTTA 8004152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || | ||||| | || || ||| || Sbjct 8004592 ATGCAAATCTTCGTTAAAACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 8004533 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 8004532 GACACTATCGACAACGTAAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 8004473 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || || ||||| || | || |||| ||| || ||| |||||||||| Sbjct 8004472 CAGAGATTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 8004413 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || || | | ||| | ||||| Sbjct 8004412 ATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTACGTGGAGG 8004366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || ||||| || |||||| || | || |||||||| || ||| | ||| Sbjct 4935936 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 4935877 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || | | |||||||| || || ||||| || || || || | || | Sbjct 4935876 GATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTCGTCTTG 4935817 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 4935816 AGGCTCAGAGGTGGAA 4935801 >seq350 Length=9129079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || | ||||||||||||||| || || | |||| | | |||| ||| Sbjct 8498982 ATGCAGATCTATGTAAAGACTTTGACAGGAAAGTTCATCTCCTTAACGTTGGAAGACTCT 8498923 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || || | ||| || ||||| || ||||| || ||||| Sbjct 8498922 GACACCATCGAAAACGTGAAGGCCAAGATTCA-GGATAAAGAGGGCATTCCGCCGGACCA 8498864 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| ||| |||| | ||||||| |||||| |||| || ||||| Sbjct 8498863 GCAGAGGCTTATCTTTGCTGGCGAACATCTTGAAGATGGTCGCACATTGGGTGACTACAA 8498804 Query 25178 TATTCAAAAAGAATCCACGCTACATTT 25204 || | || || || || || || || Sbjct 8498803 CATCAAGAATGACTCGACCCTTCACTT 8498777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324276764575