Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq481 165 9e-36 seq396 91.5 2e-13 seq350 91.5 2e-13 seq393 89.7 6e-13 seq544 87.8 2e-12 seq413 87.8 2e-12 seq397 86.0 7e-12 seq228 86.0 7e-12 seq186 86.0 7e-12 seq664 84.2 2e-11 seq420 84.2 2e-11 seq440 82.4 9e-11 >seq481 Length=6868915 Score = 165 bits (182), Expect = 9e-36 Identities = 392/582 (67%), Gaps = 9/582 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || || ||| ||||| ||||| ||||| || |||||||| ||| ||| || || Sbjct 949347 GCAGGCGAAATCGCAGTGTAAGCCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAA 949288 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaa 93209 || || | || ||||| ||||| ||||| || || || ||| || ||||| || || | Sbjct 949287 TCCCGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGA-GCAGAAGCTACCGGAGAAGA 949229 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | |||||||| ||| || || || | || | |||||| || | | || | | | Sbjct 949228 AGATACCTTCGACGCAGGCGAAAGCGATGATTCTTTCGGCGAAGGT--CTGAGATCCGTC 949171 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||| || | ||||| | ||||| ||| | ||||| | |||||||| || Sbjct 949170 -GATCCACTTCATGGCCCACTGTGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTC 949112 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 || || | |||| ||| | || ||||| ||||||| | ||| |||| Sbjct 949111 GGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTATCGAGGAGGAGACTGTACA 949052 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || |||| ||||| || || || |||||||| |||||| | || |||| || Sbjct 949051 TCTCCGAGTGGATGTTCTCGATCGCGATCTGGAATCCATAGAAAGCACGCGCCTCCGAGA 948992 Query 93450 TCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 || || || || | || || | ||||| || ||| || || || || || Sbjct 948991 CTTGTACATCG-GACATGAACCTGGAAGCAAGATTCTCCAGGACGATTCCGTCTGAGGCG 948933 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 || || ||||| | | || || || || ||| ||| | || || || || ||||| Sbjct 948932 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAG 948873 Query 93569 TCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| || | |||| || || ||||||||||| | ||||| || |||||||| || || Sbjct 948872 TCGCGACCG-TCTTGCGATAGGTCGACTTCTTCCGCCGTCCAGAAAGATGCTTCGGCCTT 948814 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||||||| ||||| || | | | || || ||||| || || Sbjct 948813 CTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACAT 948772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/102 (80%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3094693 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3094636 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| || ||| ||||| |||||| || Sbjct 3094635 TTCAAATCCCACAGCTGTCATATTTTTATT--TATTTTTATT 3094596 >seq396 Length=12270481 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/109 (80%), Gaps = 7/109 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| ||||| |||||| | ||| || | Sbjct 5091228 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGT--CTTCGAGAGAAGG 5091171 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTTGTT 126369 ||||||||| |||||||| |||||| ||| || | | |||||||| Sbjct 5091170 CGTGGGTTCAAACCCCACTTCTGACAGTTTAGTTTTATGTTTTTTTGTT 5091122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3523474 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3523531 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| |||||| || Sbjct 3523532 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 3523566 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 5092457 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 5092398 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||| || ||||| ||||||| |||| Sbjct 5092397 GTGGGTTCAAATCCCACTTCTGACAATTTAT 5092367 >seq350 Length=9129079 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 2722946 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 2722889 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| |||||||| |||||||||| Sbjct 2722888 CGTGGGTTCAAACCCCACTTCTGACAAATT 2722859 >seq393 Length=11819561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/98 (82%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 5166301 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 5166244 Query 126322 CGTGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 ||||||||| |||||||| |||||| ||||||||| Sbjct 5166243 CGTGGGTTCAAACCCCACTTCTGACATCTATTATTATT 5166206 >seq544 Length=10977244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1224249 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1224306 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| |||||| || Sbjct 1224307 GGGTTCAAATCCCACAGCTGTCAAATTTTT 1224336 >seq413 Length=15208799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3741879 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3741936 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| |||||| || Sbjct 3741937 GGGTTCAAATCCCACAGCTGTCAAATTCTT 3741966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/99 (81%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6130232 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6130175 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 ||| || |||||| ||| ||| | | ||||| |||||| Sbjct 6130174 TTCAAATCCCACAGCTGTCAATTGTTTTATTTTAATTTT 6130136 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| | | || |||| Sbjct 6145206 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGATAGG--GCGT 6145149 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 6145148 GGGTTCAAATCCCACAGCTGTCAA 6145125 >seq397 Length=2592215 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 2000063 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2000006 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 2000005 GCGTGGGTTCAAACCCCACTTCTGACA 1999979 >seq228 Length=2719846 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1773388 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1773331 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 1773330 CGTGGGTTCAAATCCCACTTCTGACAA 1773304 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 158964 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 158907 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 158906 GCGTGGGTTCAAACCCCACTTCTGACA 158880 >seq186 Length=9101398 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3228210 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3228153 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 3228152 GCGTGGGTTCAAATCCCACTACTGACA 3228126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 3230168 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 3230111 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 3230110 GCGTGGGTTCAAATCCCACTTCTGACA 3230084 >seq664 Length=12074320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3861794 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3861737 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 3861736 TTCAAATCCCACAGCTGTCAATTTTTTTTT 3861707 >seq420 Length=6996948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1832875 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1832932 Query 126325 GGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 |||||| || |||||| ||| ||| | | ||||| | |||| Sbjct 1832933 GGGTTCAAATCCCACAGCTGTCAATTGTTTTATTTTATTTTT 1832974 >seq440 Length=7283533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 8/96 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 5046061 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 5046004 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||| |||||| || Sbjct 5046003 CGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 5045970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855892664200