Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq664 86.0 4e-12 seq440 86.0 4e-12 seq393 86.0 4e-12 >seq664 Length=12074320 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| || || ||||| || || || |||| ||| | | Sbjct 3114371 ATGCAAATCTTCGTTAAAACCTTGACTGGCAAGACTATCACTTTGGAGGTCGAAAGCTCC 3114312 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || ||||| || || | ||| |||| Sbjct 3114311 GACACCATCGACAATGTTAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAG 3114252 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||| || ||||| || || || ||| || |||||||||||||| Sbjct 3114251 CAAAGGTTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAT 3114192 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||| ||||| |||| || ||| | || ||||| Sbjct 3114191 ATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTCCGTGGAGG 3114145 >seq440 Length=7283533 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || ||||| ||||||||||| |||| ||| | | Sbjct 660702 ATGCAAATTTTCGTCAAGACTTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGCTCC 660761 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | |||| || || || ||||||||| | ||| |||| Sbjct 660762 GACACCATTGACAACGTTAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCAG 660821 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || || || ||||| || || | || ||||||||||||| Sbjct 660822 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACCTTGGCCGATTACAAC 660881 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || |||||| |||| || ||| | || || || Sbjct 660882 ATCCAGAAGGAGTCCACACTTCATTTGGTCTTGCGTCTCCGTGGTGG 660928 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || || ||||| || ||||||||| | || || | | Sbjct 660930 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACCATTACCCTCGAGGTCGAGAGCTCT 660989 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || ||||||||| | || |||| Sbjct 660990 GACACAATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCCCCGGACCAG 661049 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || || ||||| || ||| || ||||||||||||| Sbjct 661050 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCTTGGCCGATTACAAC 661109 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || |||||| |||| || ||| | || || || Sbjct 661110 ATCCAGAAGGAGTCCACACTTCATTTGGTCTTGCGTCTCCGTGGTGG 661156 >seq393 Length=11819561 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||| | ||||| || ||||| || || || ||| || ||||||||| Sbjct 8004477 ACCAGCAGAGATTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATT 8004418 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| |||||||| ||||| ||||| |||| || ||| |||| ||||| Sbjct 8004417 ACAATATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTACGTGGAGG 8004366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121722924570