Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq350 100 2e-16 seq393 98.7 8e-16 seq440 82.4 6e-11 >seq350 Length=9129079 Score = 100 bits (110), Expect = 2e-16 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||||| |||||||| ||||||||||| | | Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCG-C 5338563 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| || | |||||| ||||| |||||||| |||||||||||| || Sbjct 5338564 GAGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGG 5338623 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| || || ||| || | || | | || | ||||| Sbjct 5338624 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTGTCCGACGATTC 5338680 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| || || || |||| |||||||||||||| |||||||| Sbjct 5338681 AACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 >seq393 Length=11819561 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||||||||| |||||||| ||||||||| |||||||| || || Sbjct 356985 CCTCCACGGAGACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 357044 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | ||| |||| |||| ||||| ||||| ||||||| | |||||| ||| || Sbjct 357045 AGTGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGG 357104 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| || || ||| || | || | | || | |||||| Sbjct 357105 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTGTCCGAGGATTCG 357161 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || ||||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 357162 ACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 357215 >seq440 Length=7283533 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||| |||| |||||| ||| ||||||||| ||||||||||| ||||| || Sbjct 660919 AGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGT 660860 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||| ||||| || |||| | |||||| ||| || | | |||| Sbjct 660859 CCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCT 660800 Query 34030 TTGTC 34034 ||||| Sbjct 660799 TTGTC 660795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| |||| ||||| ||||| || ||||||||||||||||||||| || Sbjct 661385 ACCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGC 661326 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || | || || | ||||| ||||| || || || |||||||| ||| Sbjct 661325 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCC 661271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058988365410