Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq481 136 9e-27 seq350 113 1e-19 >seq481 Length=6868915 Score = 136 bits (150), Expect = 9e-27 Identities = 564/875 (64%), Gaps = 25/875 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| |||||||| | ||| | || ||| Sbjct 948775 TTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCATCTTTCTGG 948834 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGCGAGAAACTCAATG 242992 || | || ||||| || | |||| |||| ||| ||||||| ||||| ||||| | Sbjct 948835 ACGGCGGAAGAAGTCGACCT-ATCGCAAGACGGTCG-CGACTGG---GAGAATCTCAACG 948889 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| ||| || || |||||||||||| | || | ||| ||||| | ||| || || || | Sbjct 948890 ACGGCGAGCGACACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCCTCAGACGGAATCG 948949 Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCAA 243111 | |||| ||||| ||| || | ||| || ||| || | ||||| || Sbjct 948950 TCCTGGAGAATCTTGCTTCCAGGTTCA-TGTCCGATGTACAAGTCTCGGAGGCGCGTGCT 949008 Query 243112 TTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATC 243171 || |||| | ||| | | ||| ||||| || || || ||| || || Sbjct 949009 TTCTATGGATTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACAGTCTCCTCCTC 949068 Query 243172 GACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACA 243229 || || || ||| || | ||||| || || | || ||| || ||||||| || Sbjct 949069 GATACG--TACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGAGCAATCGAAACCA 949126 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---TAAAT 243286 | || || || || ||| | ||||| ||||||| | || ||| | | Sbjct 949127 TCCCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGA---CGGATCTCAGA 949183 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || || || | || |||| | | ||||| |||||||| | || ||||| || | Sbjct 949184 CCTTCGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCT 949243 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| | ||||| |||||| ||| ||| | ||||| || | | || |||| Sbjct 949244 TCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGATTGACCTTCTCCAACG 949303 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 |||| ||| ||| || || ||| | ||| | |||| ||| | || | || Sbjct 949304 AGTTGATCTCTCGAGATGAAGGCTTACACTGCGATTTCGCCTGCCTTCTCTA---CACGC 949360 Query 243467 TCC--AGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| || || ||||| | || || || ||| || || || || || | Sbjct 949361 TCCTGAGGACGAAGCTCTCGGAGGAGCGAGTGAAGTCGATCGTCTGCGACGCCGTCGAGA 949420 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| | ||| || | |||||||| |||| ||| | | | || |||||| || | Sbjct 949421 TCGAGAGGGAGTTTGTCTGCGACGCGCTTCCGTGCGCGTTAGTGGGGATGAACCGGGACC 949480 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||| ||||| || || || || | |||| |||||| || || | || Sbjct 949481 TGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTCGGGTACGGGA 949540 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | || ||| ||| || |||| | |||||| | || |||||||| || |||| Sbjct 949541 AGGTCTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGTAAAA 949600 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 | ||||||||||| ||| | || ||||||| ||| Sbjct 949601 CAAACTTCTTCGAGAAGAGAGTTGGTGATTACCAA 949635 >seq350 Length=9129079 Score = 113 bits (124), Expect = 1e-19 Identities = 427/663 (64%), Gaps = 18/663 (3%) Strand=Plus/Minus Query 149010 GCGAGATCGTCTACGTGAAGAAATTCTCGTCTTGCGATTCCTG-TTCCCCATAACTTAAC 149068 || |||||||||||||| | || || | || | | ||| | ||||||| | | ||| Sbjct 7302608 GCCAGATCGTCTACGTGCAAGAACTCCC-TCAAGGGGCTCCCGCTTCCCCAAACCACAAC 7302550 Query 149069 GCTTGG--AACATTGTGAACTTTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACG 149126 |||| | ||| || |||| ||||| ||| | || || ||| | || | |||| Sbjct 7302549 --TTGGTCAGCATCGTTGGCTTTAGCTTCATGGAACCTCCTCATGAGAGCAGGAAGCACG 7302492 Query 149127 TGACCGTTATTAAGATCGTATCGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAG 149186 || ||| | | | | | | ||| || |||||| |||||| || ||||| | ||| Sbjct 7302491 TGGGAGTTCTCAGGGTGGAAGTTGTCGTTGGGACCGTAGAGATTGGTGGGCATACCGGAG 7302432 Query 149187 ACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTC 149246 | | || || || || | | |||||| | ||||||| || || ||||| || Sbjct 7302431 ATGGCATCCCACTGATGCTGAATCCGGTAAGCTTGGCACATCTTAATCCCTGCGATCTTG 7302372 Query 149247 GCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTG 149306 || || ||||| || ||| ||||||||||| || || | ||| | ||| Sbjct 7302371 GCGATGGCGTACCATTCGTTGGTGGGTTCGAGCGGACCAGTGAGAAGAGCTGATTCGGGT 7302312 Query 149307 ATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTC 149366 || || | |||| || ||||| |||||| | |||||| || | |||||| ||| Sbjct 7302311 ATTGGCTGAGGAGCGAACTTGGGGTAGATGCAAGAGGAACCGAGGAAGAGGAGTTTCTTC 7302252 Query 149367 ACTCCGAACATTTTGGACGCA---TGAATGACATTCGTCTGAATCATCAGATTATCGTGA 149423 || ||| | | | | ||| || |||||||| |||||||| || || || | Sbjct 7302251 ACGCCGTGCGTAT---AAGCATAGTGGATGACATTGGTCTGAATTTGGAGGTTGACGCCA 7302195 Query 149424 ATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGA 149483 || ||||| | | | | ||||||||| ||||| || || ||||| || || || || Sbjct 7302194 ATGAAATCAGCTGGGTATGTGTTGTTCGCATGAATCCCACCCACTTTCGCTGCAGCCAGG 7302135 Query 149484 AATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCACTTCTCGTTGGTTTGTCAGG 149543 | |||||| | ||| || | |||| |||| | || || |||| | || ||| Sbjct 7302134 ATTACGTAAACCGGTTTCTCCGTGGCGAAGAACGATTCAACATCGGATTGGCTAGTGAGG 7302075 Query 149544 TCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCCTTCTTTTTGCAAGAGTCTC 149603 ||||| || |||||| ||||| || | | || || || |||| || Sbjct 7302074 TCGAGCTCGGAATGGGTTCGAAGGACGAGATTTGTGAAACCCGATTCCTG---GAGTTTC 7302018 Query 149604 ---ATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACATATATCTTCGAGTGTTTT 149660 | || ||| |||||||| ||| |||| || || ||| | ||||| | | |||| Sbjct 7302017 CGGACAATGGCGGATCCGACCAATCCCCTGTGCCCAGCGACAAAGATCTTTGCGGATTTT 7301958 Query 149661 TCC 149663 ||| Sbjct 7301957 TCC 7301955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870037891750