Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq664 120 4e-22 seq481 120 4e-22 seq367 100 3e-16 seq442 95.1 1e-14 >seq664 Length=12074320 Score = 120 bits (132), Expect = 4e-22 Identities = 217/312 (70%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||| ||||| |||| ||||| || || || ||| || | |||||||||||||| Sbjct 4376350 GAATTACAGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCTTGTTCAACCACGAGTC 4376409 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAA 8762 ||| |||||||| | | |||||||| | ||||||||| || ||| | ||| Sbjct 4376410 ACCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATCACGAGAGCGTTGGGGAGGATCAA 4376469 Query 8763 ATCGTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 || | | || ||||| || || || | ||||| ||| | || ||| || || Sbjct 4376470 --GGTTG-GTCTGCAGAGGAAGCTCTTT---CTTGGGAATCTCCAGGCGTCGAGAGATTG 4376523 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 |||| ||| |||||| || || || ||||||||| | | || ||||| || | || Sbjct 4376524 GGGATTCGCTGGGGACTACGTGGAGGCAATGTGGCTCATGTTGCAGCAAGAGAAGCCTGA 4376583 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 8941 ||| || || || ||||||| |||| ||||| | || |||||| ||||| | | | | Sbjct 4376584 CGATTACGTTGTGGCGACGGAGGAGTCACACACTGTTGAGGAGTTTCTTGAGGT-TTCGT 4376642 Query 8942 TAGGGAAGTTGG 8953 | ||| | |||| Sbjct 4376643 TTGGGTACTTGG 4376654 >seq481 Length=6868915 Score = 120 bits (132), Expect = 4e-22 Identities = 190/268 (71%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || || || || ||||| | || || |||||| || ||| |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| |||||| |||| || || ||| ||||||||||| || || || || ||||| Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || | || || |||| | || | ||| | ||||||||| |||||||| Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATGGCCCACTGT 949149 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| || |||| ||| | ||| ||| ||||| | | ||| | | || Sbjct 949148 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATGGTCTCTCTCTTTG 949089 Query 126303 ATGGATCTTTGATGTACTTATCTATGAG 126330 || || ||||||||| |||| | ||| Sbjct 949088 TTG--TCCTTGATGTACGTATCGAGGAG 949063 >seq367 Length=1810539 Score = 100 bits (110), Expect = 3e-16 Identities = 193/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||||||||||||||| |||||||| ||||| || || ||||| | |||||||| | Sbjct 1313592 AAAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 1313535 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | |||| |||| || || ||||| ||||| || ||||| ||| Sbjct 1313534 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1313475 Query 10994 CACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 || || |||| | | || ||||| | ||| | || || ||||| |||| Sbjct 1313474 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGATGCACCAACAC 1313417 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||| | |||||||| | || || | ||| || ||| || || | ||| | Sbjct 1313416 CAACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 1313357 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | ||||| || | || ||||||||||| || ||| Sbjct 1313356 CTGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGGT 1313316 >seq442 Length=8882589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| | ||||| || |||||||| | |||||||| | Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCC--T 3255143 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | ||| || || | | ||| | || || |||||||| ||||| |||||||| || Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || || || | || ||||| | ||||| ||||| ||||| ||||| Sbjct 3255204 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAGATCTCTAACTCTAGACGCACCCACACCA 3255263 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||| | |||||||| | | || | ||| || ||| || || | ||| || Sbjct 3255264 ACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTCTCCA 3255323 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | |||| || | ||||||||| ||||| ||||| Sbjct 3255324 GCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348335821400