Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq664 120 3e-22 seq440 111 2e-19 seq393 104 3e-17 >seq664 Length=12074320 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||||| ||| || | || || |||||||| |||||||| Sbjct 3113497 TCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 3113556 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 3113557 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTT 3113615 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| ||||| || | |||||||| || || || | ||||| Sbjct 3113616 GTCAATGGTGTCGGAGCTC---TCCACCTCTAGAGTGATGGTCTTACCGGTCAAAGTCTT 3113672 Query 42194 TACAAAGATTTGCAT 42208 ||||||||| ||||| Sbjct 3113673 TACAAAGATCTGCAT 3113687 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || |||||| ||||| || | || ||||| ||||| ||||||||||| Sbjct 3113688 ACCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGC 3113747 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 3113748 CAAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGG 3113807 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||||| |||||| ||||| ||| | | | ||||| |||| | Sbjct 3113808 GATGCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTC---T 3113863 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3113864 CCACTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || |||||| ||||| || | || ||||| || || ||||| ||||| Sbjct 3113916 ACCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGC 3113975 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 3113976 CAAAGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGG 3114035 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATT 42156 | || ||||||||| |||||| ||||| ||| | || | ||||| ||| | Sbjct 3114036 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTC---T 3114091 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3114092 CCACCTCTAGAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3114143 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||||| || || |||| || |||||||| || ||||| Sbjct 3114636 CTCCTTCTGGATATTGTAATCAGCCAATGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 3114695 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | |||||| || | || | || ||||||||| ||| | || | || | ||| Sbjct 3114696 GATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC-TGAATCTTAGCTTTAACGT 3114754 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| |||||| |||| ||||| || || || || || |||| Sbjct 3114755 TGTCAATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTCT 3114811 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 3114812 TAACGAAGATCTGCAT 3114827 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 406658 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAA 406717 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | ||| | | |||||||| ||| || ||||| | Sbjct 406718 AATCAATCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTGACATT 406777 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || |||| || ||||| || |||||||| || || || Sbjct 406778 GTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 406837 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 406838 GAAGATCTGCATCTT 406852 >seq440 Length=7283533 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||||||||| || | || |||||| ||||| |||||||| || Sbjct 661385 ACCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGC 661326 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 661325 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 661266 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||| ||| ||| ||| |||| ||| | | | ||||| |||| | Sbjct 661265 GATACCTTCCTTATCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---T 661210 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| || ||||| || ||||| | ||||| || ||||| ||||| Sbjct 661209 CGACCTCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || ||||||||| || ||||||||||||| ||| || | Sbjct 6972746 ACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCCAAAGTTCGGCC 6972805 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || | || ||||||||| | ||| | | |||||| Sbjct 6972806 GTCTTCAAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTT 6972865 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 | | ||| |||| | |||| | | | ||||| |||| || || || | | Sbjct 6972866 AT-CTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAGCTC---TCGACCTCCAGAG 6972921 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| || ||||| || ||||| ||||| Sbjct 6972922 TGATGGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 6972961 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| ||| || | || || |||||||| |||||||| Sbjct 661577 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 661518 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 661517 GATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 661459 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | |||||| || ||||| || || |||| Sbjct 661458 TGTCAATGGTGTCAGAGCTC---TCAACCTCCAACGTGATAGTCTTGCCGGTAAGTGTCT 661402 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 661401 TCACGAAGATCTGCAT 661386 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||||||| | |||| |||||| || || |||||||| |||| || || | Sbjct 661145 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACC 661086 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| || ||||| || | || ||||||||| | || | | ||| || Sbjct 661085 ATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGGGATACCCTCTTT 661026 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTC---GCTCGATTCCACATCGACC 42167 ||| ||| | || | |||| ||| | || ||||| |||| || || |||| Sbjct 661025 GTCT-TGAATCTTAGCCTTGA-CGTTGTCAATTGTGTCAGAGCTC---TCGACCTCGAGG 660971 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| | ||||| || ||||||||||| Sbjct 660970 GTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 660930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | |||| |||||| || || ||||||||||||| || || |||| || Sbjct 660454 ACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCG 660395 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || ||||| || || | |||||| || | || | | ||||||||| || Sbjct 660394 AGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC-TG 660336 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | || | || | ||| | | | ||||| ||| |||||| |||| ||||| || Sbjct 660335 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 660279 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| || ||||| ||||| Sbjct 660278 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660246 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| ||||||| || || | || || |||||||| |||||||| Sbjct 6972086 CTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAA 6972145 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || ||||||||| || | || | | | ||| Sbjct 6972146 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACGT 6972204 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | |||||||| || || || | || | Sbjct 6972205 TGTCAATGGTGTCGGAGCTC---TCCACTTCCAAGGTGATGGTCTTCCCGGTCAATGTTT 6972261 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 6972262 TGACGAAGATCTGCAT 6972277 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||| || || || ||||| ||||||| || || | || || Sbjct 6972297 ACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCG 6972356 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| || Sbjct 6972357 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCC-TG 6972415 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | || | | | ||| | | | ||||| |||| ||||| || | |||||||| Sbjct 6972416 GATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTC---TCCACCTCTAAAGTGATGGT 6972472 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | ||||| || || || ||||| Sbjct 6972473 CTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 6972505 >seq393 Length=11819561 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| |||||||| || | ||| |||||| || || ||||| || || | || || | Sbjct 8004149 ACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACC 8004208 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 8004209 ATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTT 8004268 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| |||||| ||||| | | | ||||| |||| || || || | || Sbjct 8004269 GTCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTC---TCAACCTCTAGAGT 8004325 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || | ||||| |||||||| ||||| Sbjct 8004326 AATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || |||||| ||||| || | || |||||| || ||||||||||| || Sbjct 8004365 ACCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGC 8004424 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| || | || ||||||||| | || Sbjct 8004425 CAAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGG 8004484 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| || || | ||| | | | ||||| |||| | Sbjct 8004485 GATACCTTCCTTGTCCTGGATCTTAGCCTTTA-CGTTGTCGATAGTGTCGGAGCTC---T 8004540 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || || || || | || || || ||||||||||| Sbjct 8004541 CAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208012937200