Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq664 91.5 1e-13 seq440 91.5 1e-13 seq350 82.4 5e-11 >seq664 Length=12074320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| ||| | | ||||||| | || Sbjct 406646 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTG 406705 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| ||||| ||| || ||||||||||| || || Sbjct 406706 TTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTT 406765 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || ||| ||| || || | ||| ||||| || || || Sbjct 406766 CGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGT 406825 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 406826 TAGGGTTTTCACGAAGATCTGCATCTTT 406853 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| || | | | | | || || Sbjct 3113479 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 3113538 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | || | |||||| ||||| || || ||||||||||| Sbjct 3113539 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 3113598 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| || | || || || ||| | || || |||| || ||||| ||| Sbjct 3113599 ATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCTTA 3113658 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| |||||||| || |||||| Sbjct 3113659 CCGGTCAAAGTCTTTACAAAGATCTGCATA 3113688 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 ||||| || |||||||| || || || || ||||||||||| || || | | | || Sbjct 3113704 AAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAAGG-TGCGACCATC 3113762 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | || || || ||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 3113763 CTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 3113822 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| || | || || || ||| | || || |||| || ||||| Sbjct 3113823 TTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGTGATGGT 3113882 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || |||| ||| || ||||| || |||||| Sbjct 3113883 TTTCCCGGTCAAAGTCTTCACAAAGATCTGCATA 3113916 >seq440 Length=7283533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || |||||||| || || || || || |||||||||||| | | | |||| Sbjct 660913 AAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGTCCGTCC 660854 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || ||| | ||||| | ||| ||||| || || || || ||||| Sbjct 660853 TCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCTTTGTCT 660794 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || || || ||| |||| || || || ||||||||| Sbjct 660793 TGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAATGGTT 660734 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||| || || |||||||||||| Sbjct 660733 TTTCCCGTCAAAGTCTTGACGAAAATTTGCATA 660701 >seq350 Length=9129079 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || || || ||||||||||| ||| | || ||||||| Sbjct 5338522 AACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTC 5338581 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| |||||| ||||| || || ||| || ||||||||||| Sbjct 5338582 AAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTG 5338641 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || || || ||| || |||| ||| || || || Sbjct 5338642 GATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTT 5338701 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | ||||| ||||| || ||||| || Sbjct 5338702 CCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388929220925