Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_012788.1 Length=41441 Score E Sequences producing significant alignments: (Bits) Value seq334 170 5e-38 >seq334 Length=7771 Score = 170 bits (188), Expect = 5e-38 Identities = 139/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7845 TCGTCGGCGACTTCGCCAACGGCATCCACTGGGGCGTTCAGCGGGATATCCCCGTCGAGC 7904 |||| ||||||||| |||||||||| | ||||||| |||||||| | | ||||| |||| Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 7905 TCATCAAGTACGGCGATCCCGACGGGCAAGGCGACCTGAAGCGCCACAACCAGATCGCGC 7964 | |||| |||||||| || |||||||| ||||||||| ||| | ||||||||||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 7965 TTCGGCTCGAAATCGTCTATGGCTGGTACGTCTTCACCGACCGCTTCGT 8013 | || || || ||||||| ||||||||||||||||| || |||||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGATCGCTTCGT 3045 Score = 163 bits (180), Expect = 8e-36 Identities = 429/643 (67%), Gaps = 19/643 (3%) Strand=Plus/Minus Query 657 CCCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTT-CGCCCTGGCGCTGCTC 715 |||| |||||||| ||||||||| ||| || | | ||||| ||| ||||| || | Sbjct 7356 CCCGCCAGGTCGGGAAGACGTACACGATTGGTTCGCT-GTGTTTCGCGTTGGCGATGGTG 7298 Query 716 ACGCCTGGGCTGACTG-TCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGTT 774 ||||| ||| | || || | ||||| ||||| |||||| || ||| ||||| Sbjct 7297 ACGCCGGGG-TCTTTGATCTTGTGGACGGCGCATCGGACGCGTACGCATGCGGAGACGTT 7239 Query 775 CGGCTCGATGAAGGCCATGTGCGCAACG-CCGCTGGTGAACGCGCACGTGCGGAACGTCA 833 || |||||| | ||| || | || ||| | | || || ||| | || Sbjct 7238 TGGGTCGATGGCTGGGATG-GCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGT-- 7182 Query 834 GCGACGCGCGC--GGCGACGAGGGAATCTATCTGCACAACGGGAGCCGGATCCTGTTTGG 891 ||| || ||| || || ||| ||| | | | ||||| || || ||||||| Sbjct 7181 GCGTCGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGG 7122 Query 892 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 951 || || ||| || ||||||| || ||||| || | | || | |||| || Sbjct 7121 TGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGA 7062 Query 952 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1011 ||||||| ||||| || ||||||||||| ||| || ||||| | | |||| | | Sbjct 7061 GGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACC 7002 Query 1012 GAAT---CCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGT 1068 ||| | | || || || || ||||| || ||||| || |||||| ||||||| || Sbjct 7001 TAATGGTCTGGTGTTCATGATC---GGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGT 6945 Query 1069 GTTCACGATGCTTCGGCAAGACGCGCTCGACGGCGAGTCCGAAGGCACGCTGTATGTCGA 1128 |||| |||||| ||| | | || || |||||| | | | | |||| || || Sbjct 6944 GTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGA 6885 Query 1129 GTTCTCCGCGGACGAGGGCGCGCACCCCGACGACCGGGCGCAGCTGCGCAAGGCGAACCC 1188 | | || || || ||| |||| |||| |||||||| ||| | ||| ||||||||||| Sbjct 6884 GCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCGGAAGGCGAACCC 6825 Query 1189 GTCGTATCCGCACCGCACCAGTGAGCGCGCGATTCGGCGTATGCGAAAGAACCT---CAC 1245 ||||| |||||||| || ||||| ||||||| ||| ||||| ||| || | Sbjct 6824 GTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTC 6765 Query 1246 CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATCTGGGACAAG 1288 | ||||| |||| ||||||| | |||||||||||| || Sbjct 6764 TGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAG 6722 Score = 154 bits (170), Expect = 4e-33 Identities = 278/397 (70%), Gaps = 16/397 (4%) Strand=Plus/Minus Query 7136 CTCCCCCGCAACATCGCGGACGGGATGGTGA--AGGACGTCGTGCAGGGCTCGACGGTCG 7193 || ||||||||||| |||||||| ||| | | | ||| || || ||||||||| | Sbjct 3919 CTGCCCCGCAACATTGCGGACGGCATGATCACCAAGACTCAGTCCAC--CTCGACGGTTG 3862 Query 7194 CCGCGCTGTCGGCGCGCA-AGCCGCAGCGATTCGGCAATGAG---GAC-ATCATCACTTT 7248 | |||||||| | || |||||||| ||||| |||| ||| ||| |||| Sbjct 3861 CGAAGCTGTCGG-GTGCTGAGCCGCAGAAGTTCGG---TGAGACTGACTATCTGACCTTT 3806 Query 7249 CA-ACGGCCGGCCGAAGGCTGAGTTCGTGGGTGAGGGTCAACAGAAGTCGAGCACCACCG 7307 | ||| | ||| || |||||||||| ||||| | ||| || |||||| | Sbjct 3805 GACACGTTCCCCCGC--GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTG 3748 Query 7308 GCGAATTCGACTTCGTGACCAGCACGCCGAAGAAGGCGCAGGTCACGATGCGCTTCAACG 7367 | | |||| || ||||||| | ||| ||||| |||||||| |||||||||||| Sbjct 3747 GTGCGTTCGGCTCCGTGACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACC 3688 Query 7368 AAGAGGTTCAGTGGGCCGACGAGGACTACCAGCTCGGCGTGCTCGCGACCCTGAGCGAGG 7427 | ||||| ||||||||||| |||||||||||||| ||| ||| || ||| | || Sbjct 3687 AGGAGGTCCAGTGGGCCGATGAGGACTACCAGCTGAACGTCCTCTCGCAGCTGTCCCAGA 3628 Query 7428 CCGGCGCCGAAGCACTGGCGCGCGCGCTGGATCTGGGTCTGTATCACCGGATCAACCCGC 7487 || |||| || ||| | ||||| || || || || ||||| ||||| ||| | || Sbjct 3627 AGGGTTCCGAGGCCCTGTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATCCAGCCTT 3568 Query 7488 TGACGGGAACCGTGATCCCCGGCTGGTCGAACTACCT 7524 |||||| | || ||| |||| ||| |||||||| Sbjct 3567 CGACGGGCGCTGTCATCACCGGGTGGGACAACTACCT 3531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132488490813630