Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq481 111 2e-19 seq367 98.7 1e-15 seq442 93.3 5e-14 >seq481 Length=6868915 Score = 111 bits (122), Expect = 2e-19 Identities = 188/268 (70%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || || || ||||| | || || |||||| || || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| |||||| |||| || || || ||||||||||| || || || || ||||| Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | ||||| |||| | || | || | ||||||||| ||||||||| Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATGGCCCACTGT 949149 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| || |||| ||| | ||| ||| ||||| | | ||| | | || Sbjct 949148 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATGGTCTCTCTCTTTG 949089 Query 127776 ATGGATCTTTGATGTACTTATCTATGAG 127803 || || ||||||||| |||| | ||| Sbjct 949088 TTG--TCCTTGATGTACGTATCGAGGAG 949063 >seq367 Length=1810539 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 |||||||||||||| |||||||| ||||| || || ||||| | |||||||| | | Sbjct 1313591 AAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--AC 1313534 Query 12852 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | || ||| || | | |||| |||| || || ||||| || || || ||||| |||| Sbjct 1313533 CTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1313474 Query 12910 ACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 | || |||| | | || ||||| | ||| | || || ||||| ||||| Sbjct 1313473 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGATGCACCAACACC 1313416 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||||| | ||||||||| | || || | ||| || ||| || || | ||| || Sbjct 1313415 AACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCC 1313356 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | ||||| || | || ||||||||||| || ||| Sbjct 1313355 TGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGGT 1313316 >seq442 Length=8882589 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| | ||||| || |||||||| | |||||||| | | Sbjct 3255087 AACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCC--TC 3255144 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || ||||||||||| || | Sbjct 3255145 CTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATGC 3255204 Query 12910 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 | || || | || ||||| | ||||| ||||| ||||| ||||| | Sbjct 3255205 AAGGAGCTTTCGCCTTAGCCTTCTCAAACAGATCTCTAACTCTAGACGCACCCACACCAA 3255264 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||| | ||||||||| | | || | ||| || ||| || || | ||| || | Sbjct 3255265 CAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTCTCCAG 3255324 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | | |||| || | ||||||||| ||||| || || Sbjct 3255325 CCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501793467800