Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq440 107 1e-18 seq664 93.3 3e-14 seq393 82.4 5e-11 >seq440 Length=7283533 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | ||| || || || || || ||||||||| Sbjct 660928 CCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 660869 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || || | ||| || ||| | || || || | |||||| |||| || Sbjct 660868 AAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 660809 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||||| ||| | | || |||| | |||||| || Sbjct 660808 ATACCCTCTTTGTCTTGGATCTTGGCTTTAA-CGTTGTCAATGGTGTCGGAGCTTTCAAC 660750 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 660749 CTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | ||| || || || || || ||||||||| Sbjct 661156 CCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 661097 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||| || ||| | || || || | |||||| |||| ||| Sbjct 661096 AAGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGGG 661037 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || || | ||| | | | |||||| | ||| || || Sbjct 661036 ATACCCTCTTTGTCTTGAATCTTAGCCTTGA-CGTTGTCAATTGTGTCAGAGCTCTCGAC 660978 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || ||||| ||||| || |||||||| ||||| Sbjct 660977 CTCGAGGGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 660930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| ||||| || | || || || || || || ||||||||| Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| | || || | ||||||||| |||| || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || ||| || | ||| | | | ||||| | ||| || || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTCGAC 661206 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || ||||| ||||| || |||||||||||||| Sbjct 661205 CTCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || || || ||||| ||| |||| || | || ||||| | || Sbjct 6972087 TCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAG 6972146 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| |||| || | |||||| ||||| || || |||| ||| Sbjct 6972147 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAA-CGTT 6972205 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| | ||| ||||| ||||| || || || || || || || ||||| || Sbjct 6972206 GTCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCGGTCAATGTTTTGAC 6972265 Query 39708 GAAGATCTGCATG 39720 ||||||||||||| Sbjct 6972266 GAAGATCTGCATG 6972278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| || || || || || ||||||||| Sbjct 6972963 CCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 6973022 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || | || || | || || ||| | || || | | |||||| |||| || Sbjct 6973023 AAAGTTCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 6973082 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| || || || || ||||| ||| | | | ||||| | ||||||||| Sbjct 6973083 ATGCCTTCCTTATCCTGGATCTTCGCTTTAA-CGTTGTCGATGGTGTCAGAGCTTTCCAC 6973141 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || ||||| || || || | ||| ||||||||||||||||| Sbjct 6973142 CTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 >seq664 Length=12074320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || ||| || || || || || || ||| Sbjct 3113461 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 3113520 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | || || || | || || | ||||||||| |||| || Sbjct 3113521 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 3113580 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| ||||| ||||| ||| | ||| | | || |||| | ||| ||||| Sbjct 3113581 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 3113639 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || ||||| || ||||| ||||| ||||||||||| Sbjct 3113640 CTCTAGAGTGATGGTCTTACCGGTCAAAGTCTTTACAAAGATCTGCAT 3113687 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| ||||| ||| | || |||| || || ||| | || Sbjct 3114637 TCCTTCTGGATATTGTAATCAGCCAATGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAG 3114696 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| ||||| || || ||||| ||| Sbjct 3114697 ATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCTTTAA-CGTT 3114755 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| | ||||||||| || | || ||||| || || || | ||| || || Sbjct 3114756 GTCAATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTCTTAAC 3114815 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 3114816 GAAGATCTGCAT 3114827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || ||| || || || || ||||| ||| Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || | || || || | |||||| |||| || Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| ||||| ||||| ||| | ||| | | || |||| | ||| ||||| Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 3113867 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || || ||||| || || ||||||||||| Sbjct 3113868 TTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || ||| || || || || || || ||| Sbjct 3113917 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 3113976 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | || || || | || || || | |||||| |||| || Sbjct 3113977 AAAGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3114036 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| ||||| ||||| ||| | ||| | | || |||| | ||| ||||| Sbjct 3114037 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 3114095 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || || ||||| || || ||||||||||| Sbjct 3114096 CTCTAGAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3114143 >seq393 Length=11819561 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || ||||| || ||| |||| || | || || || | || Sbjct 8004174 TCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 8004233 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 |||| ||||||||| |||| || | ||| || ||||| ||||| ||| | | | Sbjct 8004234 ATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATTTTGGCTTTGACATTG 8004293 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||||| ||| || || || | |||||| || ||||| || ||||| || | Sbjct 8004294 TCGATG--GTGTCTGAGCTCTCAACCTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCA 8004351 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 8004352 CAAAGATCTGCAT 8004364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366615335265