Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq334 178 5e-40 >seq334 Length=7771 Score = 178 bits (196), Expect = 5e-40 Identities = 303/429 (71%), Gaps = 28/429 (7%) Strand=Plus/Minus Query 2003 TGTTCGGCGCCCGTGAGAAAGGGTTCGGCCGCGGTTTCGCCAAGGTCGACGTTCTGATTT 2062 |||| || || || ||| || ||||| || || ||||| ||||| ||||| ||||| | Sbjct 7128 TGTTTGGTGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCT 7069 Query 2063 TCGACGAGGCTCAGATCCTCAGCGAAAACGCAATGGACGACATGGTTCCGGCGACCAACG 2122 |||| ||||| |||||||||| || || || ||||| |||||||||||||| || |||| Sbjct 7068 TCGATGAGGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACG 7009 Query 2123 CCTCACCTAACGGTCTGATCCTGTTCGCG---GGCACCCCGCCGAAGCCGACAGACCCCG 2179 | ||||||| |||||| | |||| | ||||| || ||| || || ||||| | Sbjct 7008 CGGCACCTAATGGTCTGGT---GTTCATGATCGGCACTCCCCCGCGCCCCACGGACCCGG 6952 Query 2180 GCGAGGTGTTCACCAACCTGCGGCTGGACGCG---ATCAACGGCGA--ATCTGACGACGT 2234 ||||||||||| | | |||| | ||||||| | ||||| | | | ||||| Sbjct 6951 GCGAGGTGTTCTCGA---TGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCG--GACGT 6897 Query 2235 TGCGTACGTAGAGATTTCGGCCGACGAGAACGACGACCCAGACGAAGAGTCGACGTGGCG 2294 |||||| ||| | |||||||| || ||| |||| ||||| || ||||||| Sbjct 6896 GATGTACGTGGAGCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCG 6837 Query 2295 CAAGATGAATCCGAGCTACCCGCACCGGACGTCTGCGCGCGCTATCCGCCGTATGCGTAA 2354 ||| ||| ||| | ||||||||||||| || | |||| ||| || ||||| || Sbjct 6836 GAAGGCGAACCCGTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAA 6777 Query 2355 ------AGCGT-TGTCCTGGGACAGTTTCAGGCGCGAGGCAATGGGCATCTGGGACAAG- 2406 | || |||| | | | ||||| | || |||| |||||||||||||| || Sbjct 6776 GCTGCTGGGGTCTGTC--GAGTC-GTTTC-GCCGTGAGGGTCTGGGCATCTGGGACGAGA 6721 Query 2407 ATCAGCGTG 2415 | ||||||| Sbjct 6720 AGCAGCGTG 6712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191230399029600