Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq442 127 3e-24 seq481 118 1e-21 seq413 114 2e-20 seq393 111 2e-19 seq367 105 8e-18 >seq442 Length=8882589 Score = 127 bits (140), Expect = 3e-24 Identities = 202/282 (72%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| ||||| |||||||| | |||||||| || Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 3255143 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || ||| Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 16092 CATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| ||| ||||| ||||| | || || || | || ||||| Sbjct 3255204 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAGATCTC-TA-ACTCTAGACGCACCCAC 3255259 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| || ||| || || || ||| Sbjct 3255260 ACCAACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTC 3255319 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | || |||||||||||||| || Sbjct 3255320 TCCAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 >seq481 Length=6868915 Score = 118 bits (130), Expect = 1e-21 Identities = 373/572 (65%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | ||||||| | | || ||||| ||||||| | || |||||||| Sbjct 948761 ACAGATTCTGTATGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCG 948820 Query 101806 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 101865 || | ||||| || ||||| || || || || | || ||| ||| ||| Sbjct 948821 AAGCATCTTTCTGGACGGCGGAAGAAGTCGACCTATCGCAAGACGGTCGCGACTGGGAGA 948880 Query 101866 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCG 101925 ||| || || || | ||||| ||| || |||| || ||||| || | || | Sbjct 948881 ATCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCCTCAG 948940 Query 101926 ATGGAATTGTTTTTGAGAATATCAATAACAACTT--TG-CTGATGAGGTGCAATCCTCTG 101982 | ||||| || | |||||| | | || || || | |||| | ||| ||| | Sbjct 948941 ACGGAATCGTCCTGGAGAATCTTGCTTCCAGGTTCATGTCCGATG---TACAAGTCTCGG 948997 Query 101983 AAGCGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATAC 102041 | ||| | ||||||||| | || | || || || | | || ||||| ||| Sbjct 948998 AGGCGCGTGCTTTCTATGGAT-TCCAGATCGCGATCGAGAACATCCACTCGGAGATGTAC 949056 Query 102042 AGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCC 102101 ||| ||| | || | ||| || ||||| |||| | || ||||| ||| Sbjct 949057 AGTCTCCTCCTCGATACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGAGCA 949116 Query 102102 ATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA 102161 ||| |||| | || || | |||||||| | ||||| ||||||||| | || | Sbjct 949117 ATCGAAACCATCCCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGACGGA 949176 Query 102162 AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 || | |||| || || || || |||| || || || || || |||||||||||| Sbjct 949177 ---TCTCAGACCTTCGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTC 949233 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || ||| ||||||| | || | ||||| ||||||||||| |||||||| || | | Sbjct 949234 TCCGGTAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGATTGACC 949293 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||| | |||||||| || || || Sbjct 949294 TTCTCCAACGAGTTGATCTCTCGAGATGAAGG 949325 >seq413 Length=15208799 Score = 114 bits (126), Expect = 2e-20 Identities = 301/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| ||||| | | || ||||| Sbjct 1883644 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 1883703 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 1883704 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGA 1883760 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| || | | | |||| || Sbjct 1883761 TTAAGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTT 1883817 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || |||||| || || Sbjct 1883818 CCAACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCCTTGGCTTTTTTG 1883877 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||| ||||||||||| ||||| | | Sbjct 1883878 AAAAGATCACG--GACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 1883935 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||||||| || | || || Sbjct 1883936 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 1883994 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || ||||| || ||| ||||| ||||| || || ||| ||| || Sbjct 1883995 TTCCCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATACGGGCACCAACCGCA 1884054 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 1884055 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1884086 >seq393 Length=11819561 Score = 111 bits (122), Expect = 2e-19 Identities = 280/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | |||||| |||| | || ||| Sbjct 6858899 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACCACGATAATACCAGTGTTACCTT--CAA 6858956 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| || | ||| ||||| | ||||||||| || Sbjct 6858957 ATCCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---C 6859013 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||| | ||||| |||| Sbjct 6859014 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGC 6859073 Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||||| || ||| ||| ||||| || || | | ||| || ||||| Sbjct 6859074 AAGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTCGAGGCACCAACACCG 6859132 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | | || | || ||| || ||| || |||||| Sbjct 6859133 ACAAACATCTCAACAAACTCAGAGCCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 6859191 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| ||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 6859192 AGCAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACC 6859251 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | || ||| ||| ||| || | | ||||| || | ||| ||||| || || Sbjct 6859252 TTTCGGGATCCGGGCACCAACCGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCAAC 6859308 >seq367 Length=1810539 Score = 105 bits (116), Expect = 8e-18 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||| || ||||||| |||||||| | Sbjct 1313592 AAAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--A 1313535 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || ||| || | | |||| | || || |||||||||||||| || || || || Sbjct 1313534 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1313475 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| || || ||||| | ||||| || || || | || || || Sbjct 1313474 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGATGCACCAAC 1313419 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| || ||| || || | ||| Sbjct 1313418 ACCAACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTC 1313359 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | ||||| || | ||| ||||| ||||| || || Sbjct 1313358 TCCTGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 1313317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736929707600