Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq481 105 8e-18 seq320 84.2 3e-11 seq396 82.4 9e-11 >seq481 Length=6868915 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| |||||||| | ||| || |||| | ||| |||||||| |||| ||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || || || || |||||||| || || || ||||||||| Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 119634 GCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 |||| | | || || |||||| |||| ||||| |||||| | ||||| | || Sbjct 949205 GCGATGATTCTTTCGGC-GAAGGTCTGAGATCCGTCGATCCACTTCATGGCCCACTGTGC 949147 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTG 119737 || | | | ||| |||| |||| ||| ||| ||| || || Sbjct 949146 TTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATG 949102 >seq320 Length=3991519 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 ||| || |||| | |||||| ||||| ||||||||||||| ||| || | || | | || Sbjct 318266 ACAAATCTGGGTAAAGCAATTGACGCCAGATTGCACACAGCAGTTTC-TGTTGGACTAGT 318208 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||||| || || || ||||| ||| ||| |||||| || | |||||| Sbjct 318207 GTACTCAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCCAAATTTTGCTGATT 318148 Query 110391 CGATTTGGAGTTGCATGCATCCT 110413 |||| |||||||| ||||| Sbjct 318147 GCTTTTGCTGTTGCATGAATCCT 318125 >seq396 Length=12270481 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 31306 CCTCGGGAACATAGAGGCTCGTCGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCAT 31365 ||||||||||||| |||| | |||| ||||| || ||||||||||||||| || Sbjct 150951 CCTCGGGAACATACAGGCGTCTAGAGACTGGGGGTTCGCAGGGGACTACGTGGAGGCAAT 150892 Query 31366 GTGGCTCATGCTTCAACAAGAACGTCCAGATGATTATGTCGTCGCAAC 31413 |||||| ||||| || || || |||||||| || || |||||||| Sbjct 150891 GTGGCTGATGCTGCAGCAGGAGAAACCAGATGACTACGTGGTCGCAAC 150844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970809649000