Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq442 129 7e-25 seq413 123 3e-23 seq367 118 1e-21 seq393 109 6e-19 seq481 95.1 1e-14 seq320 91.5 2e-13 >seq442 Length=8882589 Score = 129 bits (142), Expect = 7e-25 Identities = 199/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || ||||| |||||||| | |||||||| || Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 3255143 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| ||||||| || ||||||||||||||||| ||||| Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 9399 CATGGTTGATTTTCGCGG--GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || |||||| || | ||||| ||||| | ||| || || ||||||| Sbjct 3255204 CAAGGAGC--TTTCGCCTTAGCCTTCTCAAACAGATCTCTAACTCTAGACGCACCCACAC 3255261 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 ||||||| | ||||||||| | | || | ||| || ||| || || || ||| | Sbjct 3255262 CAACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTCTC 3255321 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| || | || |||||||||||||| || Sbjct 3255322 CAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 >seq413 Length=15208799 Score = 123 bits (136), Expect = 3e-23 Identities = 298/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| ||||| | | || || || Sbjct 1883644 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 1883703 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 1883704 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTA 1883763 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || |||| || | | | |||| |||| Sbjct 1883764 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTTCCA 1883820 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 1883821 ACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCCTTGGCTTTTTTGAAA 1883880 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || |||||| || || ||||| ||||||||||| ||||| | | | | | Sbjct 1883881 AGATCACGGACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 1883939 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| || |||||| ||||||||| || | || || || || Sbjct 1883940 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1883999 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| ||||| |||| || || ||| ||| || | | Sbjct 1884000 AGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATACGGGCACCAACCGCAGTGAA 1884059 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 1884060 CCTCTCAGGCTTCTTCAGAAACTCCAC 1884086 >seq367 Length=1810539 Score = 118 bits (130), Expect = 1e-21 Identities = 220/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 9242 ATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAA 9301 ||| ||||| || | ||||| || ||| | | | | ||| ||||||||||| ||||| Sbjct 1313631 ATTGGTCGCAGCCAAGACAATAACACCGGAGTTACCAGAAAAGCCATCCATCTCCGTCAA 1313572 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGT 9359 || || ||||| || ||||||| |||||||| | | | || ||| || | | | Sbjct 1313571 GAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--ACCTCCCATACCTGCTCCTCTT 1313514 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGG 9417 ||| | || || |||||||||||||| || || |||||||| || |||||| | Sbjct 1313513 TGCCTACCAACAGCATCAATCTCATCTATAAAAACAATACAAGG--AGCTTTCGCTTTCG 1313456 Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477 | | ||||| | ||| | |||||| || || ||||||||||| | ||||||||| | Sbjct 1313455 CCTTCTCAAACAAATCCCTAACCCTAGATGCACCAACACCAACAAAAAGCTCCACAAACT 1313396 Query 9478 TTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9537 | || | ||| || ||| || || | ||| || || | ||||| || | || Sbjct 1313395 CGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCCTGCCACGGCTCTAGCCAAAA 1313336 Query 9538 GAGTCTTACCCGTACCTGG 9556 | ||||| ||||| || || Sbjct 1313335 GCGTCTTCCCCGTTCCCGG 1313317 >seq393 Length=11819561 Score = 109 bits (120), Expect = 6e-19 Identities = 275/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | |||||| || | | ||||| Sbjct 6858899 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACCACGATAATACCAGTGTTACCTTCAAAT 6858958 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || || | ||| ||||| | ||||||||| || | Sbjct 6858959 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 6859015 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 6859016 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 6859075 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || |||||||| || || ||| || ||||| ||| Sbjct 6859076 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTCGAGGCACCAACACCGACA 6859135 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | | || | || ||| || ||| || |||||| || Sbjct 6859136 AACATCTCAACAAACTCAGAGCCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 6859194 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 6859195 AATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTTT 6859254 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 || ||| ||| ||| || | | ||||| || | ||| ||||| || || Sbjct 6859255 CGGGATCCGGGCACCAACCGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCAAC 6859308 >seq481 Length=6868915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || |||||||| || || | || || |||||| | || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||| ||| | || | |||||| ||||||||||||||||| || || || || || Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | | |||||||||| |||| | ||| | ||| ||||| ||||| | Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATGGCCCACTGT 949149 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 117507 || |||||| | | || || | |||| ||| ||| Sbjct 949148 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCT 949113 >seq320 Length=3991519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || || ||||||||||| || || | ||| ||| ||||| | || Sbjct 317082 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGC 317023 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||| |||| | |||||||||| || ||| ||||||||| | || Sbjct 317022 GACATCAAATGGTAAGTCTTGATTGCAGAATCAATATCGTCCTTGTGGATGCCAACAGCA 316963 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| | ||||| || || |||| | | |||||| || | || |||| | Sbjct 316962 ACCCTCATTAGCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGA--CTTTTAAGAGGT 316905 Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | || ||||||| ||||||| ||||||||| || | ||| | || || Sbjct 316904 ACGATC-TCTCAAGAGTTTTGAATCCAAAGTAATCATATTCAAAATCACG 316856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975600794200