Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq664 104 2e-17 seq393 104 2e-17 seq440 100 2e-16 seq350 95.1 8e-15 >seq664 Length=12074320 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || ||||||||||| ||||| || Sbjct 406659 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAAA 406718 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||| |||||||| |||||| |||||| || Sbjct 406719 ATCAATCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGGATCTTCGCTTTGAC--AT 406776 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || || || |||| ||||||||| || ||||| || || || Sbjct 406777 --TGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 406834 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 406835 CACGAAGATCTGCATCTT 406852 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||||| || ||| ||||||||||| || || | | | | || |||| Sbjct 3113703 CAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATC 3113762 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| || || || | | |||||||| | || | || |||||||| Sbjct 3113763 CTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 3113822 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || ||||||| | || | || | ||| || || | || ||||| Sbjct 3113823 TTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGTGATGGT 3113882 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || | |||||||||||||||||||||| Sbjct 3113883 TTTCCCGGTCAAAGTCTTCACAAAGATCTGCATA 3113916 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCA 34826 ||| |||||||||| || ||| ||||| ||||| ||||| | |||| | || || Sbjct 3113931 CAAGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAAAG--TGCGACCA 3113988 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| ||||| || || || | | |||||||| | || | || |||||| Sbjct 3113989 TCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTG 3114048 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || || || ||||||| | || | || | ||| || || | || ||| Sbjct 3114049 TCCTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATG 3114108 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || || | |||||||||||||||||||||| Sbjct 3114109 GTTTTCCCAGTCAAAGTCTTCACAAAGATCTGCATA 3114144 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830 |||||||||| || ||| ||||| ||||| ||||| | |||| | || |||| | Sbjct 3113479 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAAAG--TGCGACCATCCT 3113536 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| ||||| || || || || || |||||||| | || | || |||||||| Sbjct 3113537 CAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCT 3113596 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||||| | || | || | ||| || || | || ||||| | Sbjct 3113597 GGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCT 3113656 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | |||||| ||||||||||||||| Sbjct 3113657 TACCGGTCAAAGTCTTTACAAAGATCTGCATA 3113688 >seq393 Length=11819561 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | || |||| |||| || ||||| |||||||| || Sbjct 8004630 TCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCATCTTCAAGCTGCTTTCCGGCGAAG 8004689 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 8004690 ATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTA 8004749 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| |||||||| | ||||| ||| Sbjct 8004750 TCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTTCCCGTCAACGTCTTAACA 8004809 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 8004810 AAGATCTGCATA 8004821 Score = 102 bits (112), Expect = 5e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| ||| || ||||| ||||| ||||| | | | | || |||| Sbjct 8004153 AACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCC 8004212 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| ||||| || || ||||| || |||||||| | || | ||||||||||| Sbjct 8004213 TCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 8004272 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945 || || |||||| || | ||||| || | |||||| || | || || Sbjct 8004273 TGGATTTTGGCTTTGAC--AT--TGTCGATGGTGTCTGAGCTCTCAACCTCTAGAGTAAT 8004328 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || || | |||||||||||||||||||||| Sbjct 8004329 GGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATA 8004365 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || || || ||||| ||||| | |||| | || |||| || ||||| |||||||| | Sbjct 8005314 TCCTTTTGGATGTTGTAGTCAGCCAAAGTC--CGGCCATCTTCGAGCTGCTTTCCGGCGA 8005371 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || | ||||| || | || | || |||||||| ||||| ||| ||| Sbjct 8005372 AGATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTAACGT 8005431 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | || | ||| || |||| ||| ||||| ||||| |||||||| |||| Sbjct 8005432 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCA 8005491 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 8005492 CAAAGATCTGCAT 8005504 >seq440 Length=7283533 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| |||||||||| || || ||||||||||| || || | Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || ||||| |||||||| || || || || |||||||| | || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| |||||| | || | ||| | ||| || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 661205 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||| |||||||| | |||||| || |||||||||||| Sbjct 661204 TCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCATA 661157 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || |||| | || || || || ||||||||||| Sbjct 660664 TCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCTTCGAGTTGCTTTCCGGCAAAG 660605 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||||||||||| |||||| |||||| Sbjct 660604 ATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTG 660545 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || |||| ||| ||||| ||||| ||||||||||| || Sbjct 660544 TCGATGGTGTCAGAACTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACG 660485 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 660484 AAGATCTGCATA 660473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829 ||||||||| | ||| || ||||| ||||| || || | |||| |||| | || Sbjct 6972980 AACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAG--TTCGACCGTCT 6973037 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| |||||||| || || || | |||||||| |||| | || ||||| || Sbjct 6973038 TCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCC 6973097 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| ||| ||| | || | ||| | || || |||| ||| || || Sbjct 6973098 TGGATCTTCGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTC 6973157 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| || ||||||||||| Sbjct 6973158 TTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| | ||||||||||| |||| || ||||| ||||| || || | | | | || | Sbjct 660461 CCTTAGAACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCC 660402 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || || || |||||||| || || || | ||||| || | || | || ||||| Sbjct 660401 GTCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTT 660342 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| ||||| ||| ||| | || | ||| | || || |||| ||| || Sbjct 660341 GTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 660282 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||||||||| || ||||||||||| Sbjct 660281 TGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660246 >seq350 Length=9129079 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| | | ||||||||||| || ||| ||||| ||||| || |||| Sbjct 5338504 TCCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 5338563 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | | || || || || || ||||| ||||| || || ||||| || | || Sbjct 5338564 GAGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGG 5338623 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCT 34929 | ||| |||||||| |||||| || || || | ||||| | ||| | | Sbjct 5338624 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCAC--AT--TGTCGATCGTGTCCGACGATT 5338679 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 |||| || | |||||| || || ||||| | || ||||||||||||||||| ||| Sbjct 5338680 CAACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTC 5338735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630810687240