Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq385 114 1e-20 seq320 96.9 4e-15 >seq385 Length=11279646 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| | || | | |||||| ||||||||| Sbjct 380581 CCTCCTTGATCAACATAGCGAGCAGTATCGTTGAACACCCGCAGCATTGGAACAATACCA 380522 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || |||| ||||| || || ||| ||||||||| | || | || || || |||| Sbjct 380521 TTAGATACTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGAA 380462 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || |||| ||| | ||||||| ||| | || ||||| ||| Sbjct 380461 ACACCAATACCACCGGCAGATTTACTTATAACAGCACACTCTTTCAAAGTGTCATATATT 380402 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||| || |||| Sbjct 380401 CCCTCAATGCTATCGTCCTTCAT 380379 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | || |||||||||||| | |||||| || || | ||| | Sbjct 380262 AGTTCCAGAATTGAAGAGAGTGGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 380203 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| | ||||| ||||| | ||| || || || | ||| || | ||| | Sbjct 380202 GTAAGTTTGGATAGCGGAATCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATGA 380144 Query 48718 ACATATATTGAGGTCTTTCAA-CAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||| | ||||| ||||||| || |||| | | | ||| || || |||||| | || Sbjct 380143 GCATGTGCTGAGGCCTTTCAATCACTTTTCCT-TGGACTTTTAAGAGGTATGATCTCTCG 380085 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 | |||||| || ||||| |||| ||| ||| ||| ||||| ||| ||| Sbjct 380084 AGTGTTTTGAATCCAAAGTAGTCATATTCAAAATCGCGATCATAAATGATT 380034 >seq320 Length=3991519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 317407 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 317348 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||| || |||||| | || | |||||| || |||| Sbjct 317347 TTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGAA 317288 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||| || || ||| || | ||||||| ||| || || ||||| || Sbjct 317287 ACGCCAATACCCCCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATATG 317228 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 317227 CCCTCGATGCTATCATCTTTCAT 317205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| ||| || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 317071 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 317012 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || || | || ||||||| ||||| | ||| || || || | || || | ||||| Sbjct 317011 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTG-TGGATGCCAACAGCAACCCTCATTA 316953 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||||| |||||||||| |||| || | ||| || || || ||| | || | Sbjct 316952 GCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTTAAGAGGTACGATCTCTCAA 316893 Query 48778 ATGTTTTAAAACCAAAATA 48796 ||||| || ||||| || Sbjct 316892 GAGTTTTGAATCCAAAGTA 316874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103846416200