Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq440 123 2e-23 seq664 118 8e-22 seq393 113 4e-20 >seq440 Length=7283533 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| ||||| || ||||| || |||||||| || | ||||| | | Sbjct 6972746 ACGCAAGACCAAGTGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGCCAAAGTTCGGCC 6972805 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| |||||||| ||||| | ||| || || || || || || || || Sbjct 6972806 GTCTTCAAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTT 6972865 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| | || | |||||||| | || || || ||||||| Sbjct 6972866 ATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCCAGAGTGAT 6972925 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || || || |||||||| Sbjct 6972926 GGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 6972961 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | ||| || || || || || || || || || ||||||||||| Sbjct 6972963 CCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 6973022 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | ||||| || || || || | | ||| || || ||||| Sbjct 6973023 AAAGTTCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 6973082 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || ||| || | || | |||||||| ||||||| Sbjct 6973083 ATGCCTTCCTTATCCTGGATCTTCGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACC 6973142 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| | ||| ||||| || |||||||| Sbjct 6973143 TCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || |||||||| || || || || || ||||||||||| Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || || || || | |||||| || || || || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || ||| || || | || | |||||||| | || || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 661205 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || || || || ||||| || || || |||||||| Sbjct 661204 TCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| ||||| | || | |||| || Sbjct 661822 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 661763 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || || || ||||||||||| || ||||| Sbjct 661762 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGG 661703 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | ||||| || || || | ||| || Sbjct 661702 ATCTTGGCCTTCACGTTATCAATTGTGTCGGAACTCTCCACCTCGAGGGTTATCGTCTTA 661643 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 661642 CCGGTCAAGGTCTTCACGAAAATCTGCAT 661614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || |||||||| || || || || || || ||||||||||| | || | | Sbjct 660917 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGTCC 660858 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||| || || || ||||| | ||| || || || || || || ||||| Sbjct 660857 GTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCTTT 660798 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || ||| || | || | ||||| || |||| || || | ||| | Sbjct 660797 GTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAAT 660738 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || || || || ||||| Sbjct 660737 GGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || |||||||| || || || || || || ||||||||||| | || | | Sbjct 661145 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACC 661086 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || ||||| | ||| || || || || || || ||||| Sbjct 661085 ATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGGGATACCCTCTTT 661026 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| || || || | || | |||||||| | || || || || || | Sbjct 661025 GTCTTGAATCTTAGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCGACCTCGAGGGTAAT 660966 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| || || || || ||||| Sbjct 660965 GGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 660930 >seq664 Length=12074320 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || || || || ||||||||||| || | || | | | || || Sbjct 3114618 AACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGGCCGTCTTC 3114677 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || || || || | | ||| ||||| || ||||||||||| || || || Sbjct 3114678 CAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 3114737 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || ||| || | || | |||||||| ||||||| || || |||| || || Sbjct 3114738 AATCTTAGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTT 3114797 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 3114798 CCCGGTGAGAGTCTTAACGAAGATCTGCAT 3114827 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || ||||||||||| || || || |||||||||||||| Sbjct 3114145 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 3114204 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| ||||| || ||||| | || || || || || Sbjct 3114205 AAGGTGCGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGAGGG 3114264 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | ||||| || |||| || Sbjct 3114265 ATGCCTTCCTTATCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCGGAGCTTTCGACC 3114324 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || ||||| || || ||||| || || || ||||| Sbjct 3114325 TCCAAAGTGATAGTCTTGCCAGTCAAGGTTTTAACGAAGATTTGCAT 3114371 >seq393 Length=11819561 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || ||| || || || ||||||||||| || || || |||||||||||||| Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| ||||| || ||||| | ||| || || || || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||||| | || | |||||| || | || || Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATAGTGTCGGAGCTCTCAACC 8004545 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || || ||||| || || || ||||| Sbjct 8004546 TCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| ||||| | || | |||| || Sbjct 8003928 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCCTCA 8003987 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || || || ||||||||||| || |||||| Sbjct 8003988 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGA 8004047 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | ||||| || ||||||| || || Sbjct 8004048 ATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCTTA 8004107 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 8004108 CCGGTCAAGGTCTTCACGAAAATCTGCAT 8004136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274995101685