Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq393 104 2e-17 seq664 98.7 8e-16 seq440 87.8 1e-12 >seq393 Length=11819561 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| |||| ||| |||| | || || | |||||| ||||| || Sbjct 8004629 CTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCATCTTCAAGCTGCTTTCCGGCGAA 8004688 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| || |||| |||| ||||||||||| |||||| || || Sbjct 8004689 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTT 8004748 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| ||||| || ||||||||||| || || || Sbjct 8004749 ATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTTCCCGTCAACGTCTTAAC 8004808 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 8004809 AAAGATCTGCAT 8004820 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || |||||||| || || || ||| || || || ||||| || | || | ||| Sbjct 8004147 AGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGA 8004206 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| || |||| |||| ||||||| Sbjct 8004207 CCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCC 8004266 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | | ||||| ||| ||||| | ||| Sbjct 8004267 TTGTCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCTAGAGTA 8004326 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || ||||| |||||||| Sbjct 8004327 ATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 >seq664 Length=12074320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 |||||| || ||| || ||||| ||||| |||| ||| |||| |||| || | ||| Sbjct 3114396 ATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCGTCTTCAAGCTG 3114455 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || |||| | ||| || |||| || | ||||||||||| |||||| Sbjct 3114456 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 3114515 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| || | | | || || || ||||||| ||||| || ||||| || Sbjct 3114516 AGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAATGGTCTTTCCAGT 3114575 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 3114576 CAACGTCTTAACAAAAATCTGCAT 3114599 >seq440 Length=7283533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || ||||| |||||||| | | | ||| Sbjct 661375 AGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGA 661316 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || || ||||| || |||| || | || ||| Sbjct 661315 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCC 661256 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | || || ||| ||||| | ||| Sbjct 661255 TTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTA 661196 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||||||| || || || |||||||| Sbjct 661195 ATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934326912715