Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq497 600 1e-166 seq456 600 1e-166 seq219 600 1e-166 >seq497 Length=57642 Score = 600 bits (664), Expect = 1e-166 Identities = 732/996 (73%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| ||||| | || | || ||||| ||||| |||||| Sbjct 15634 TGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 15575 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || || || || |||||||| || ||| Sbjct 15574 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCCT 15518 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| ||||| ||||| Sbjct 15517 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAAT 15458 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||||||| | || || || || ||| Sbjct 15457 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 15398 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 15397 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 15338 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 15337 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 15281 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 15280 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 15221 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || Sbjct 15220 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 15161 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||| Sbjct 15160 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCAT 15101 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || |||||||||||||| Sbjct 15100 CCGTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 15041 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 15040 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 14981 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 14980 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 14921 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | Sbjct 14920 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 14861 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 14860 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 14801 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCT 163395 ||||| || |||||||| ||||||||||| || ||||| || || ||| | Sbjct 14800 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAAT 14741 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| ||||| | || |||||||||||||||||||| || |||||| Sbjct 14740 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 14681 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || ||||| ||||||| |||| Sbjct 14680 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 14645 >seq456 Length=23154 Score = 600 bits (664), Expect = 1e-166 Identities = 732/996 (73%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| ||||| | || | || ||||| ||||| |||||| Sbjct 16607 TGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 16548 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || || || || |||||||| || ||| Sbjct 16547 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCCT 16491 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| ||||| ||||| Sbjct 16490 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAAT 16431 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||||||| | || || || || ||| Sbjct 16430 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 16371 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 16370 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 16311 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 16310 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 16254 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 16253 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 16194 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || Sbjct 16193 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 16134 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||| Sbjct 16133 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCAT 16074 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || |||||||||||||| Sbjct 16073 CCGTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 16014 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 16013 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 15954 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 15953 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 15894 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | Sbjct 15893 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 15834 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 15833 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 15774 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCT 163395 ||||| || |||||||| ||||||||||| || ||||| || || ||| | Sbjct 15773 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAAT 15714 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| ||||| | || |||||||||||||||||||| || |||||| Sbjct 15713 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 15654 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || ||||| ||||||| |||| Sbjct 15653 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 15618 >seq219 Length=26726 Score = 600 bits (664), Expect = 1e-166 Identities = 732/996 (73%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| ||||| | || | || ||||| ||||| |||||| Sbjct 17404 TGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 17345 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || || || || |||||||| || ||| Sbjct 17344 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCCT 17288 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| ||||| ||||| Sbjct 17287 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAAT 17228 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || || ||||| | |||||| ||| ||||||||| | || || || || ||| Sbjct 17227 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 17168 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 17167 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 17108 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 17107 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 17051 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 17050 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 16991 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || Sbjct 16990 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 16931 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||| Sbjct 16930 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCAT 16871 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || |||||||||||||| Sbjct 16870 CCGTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 16811 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 16810 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 16751 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 16750 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 16691 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | || |||||| | Sbjct 16690 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 16631 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 16630 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 16571 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCT 163395 ||||| || |||||||| ||||||||||| || ||||| || || ||| | Sbjct 16570 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAAT 16511 Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| ||||| | || |||||||||||||||||||| || |||||| Sbjct 16510 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 16451 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || ||||| ||||||| |||| Sbjct 16450 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 16415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553079925940200