Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq442 134 2e-26 seq367 129 7e-25 seq413 123 3e-23 seq393 120 4e-22 seq664 109 7e-19 seq320 100 3e-16 seq481 95.1 1e-14 >seq442 Length=8882589 Score = 134 bits (148), Expect = 2e-26 Identities = 200/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||||||| | || |||| | || || ||| | || || ||| Sbjct 3255361 CCTGGTACGGGTAAGACCCTCTTGGCTAGAGCAGTGGCTGGAGAAGCTGGAGTACCTTTC 3255302 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || | | ||||||||| | ||||||||||||||||| || ||| Sbjct 3255301 TTCTCCTGTGCGGCTTCTGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCGTCTAGAGTT 3255242 Query 175435 CGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||||| ||||| | || |||||| || || ||||| ||||||||||||| Sbjct 3255241 AGAGATCTGTTTGAGAAGGCTAAGGCGAAAGCT--CCTTGCATTGTTTTCATTGATGAGA 3255184 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || ||||| | ||| | | ||||| ||| | | || |||||| |||||||| Sbjct 3255183 TTGACGCTGTGGGAAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAGA 3255126 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||||| |||||||| | | || ||||||||||| ||| Sbjct 3255125 ACAAACGATTAATCAGTTGTTGACTGAGATGGATGGGTTT 3255086 >seq367 Length=1810539 Score = 129 bits (142), Expect = 7e-25 Identities = 199/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | || ||||| | || || ||| || || |||||| Sbjct 1313317 CCGGGAACGGGGAAGACGCTTTTGGCTAGAGCCGTGGCAGGAGAAGCAGGAGTGCCATTC 1313376 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| | ||||||||||| ||||| |||||| Sbjct 1313377 TTCTCGTGTGCTGCTTCCGAGTTTGTGGAGCTTTTTGTTGGTGTTGGTGCATCTAGGGTT 1313436 Query 175435 CGCGATCTCTTT--GAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||| ||| || |||||| || |||||||| || || ||||||| Sbjct 1313437 AGGGATTTGTTTGAGAAGGCGAAAGCGAAA--GCTCCTTGTATTGTTTTTATAGATGAGA 1313494 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | |||| | | || || ||| | | | |||||| ||||| || Sbjct 1313495 TTGATGCTGTTGGTAGGCAAAGAGGAGCAGGTATGGGAGG--TGGAAATGATGAGAGGGA 1313552 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||||||| Sbjct 1313553 ACAGACGATTAATCAGCTCTTGACGGAGATGGATGGCTTT 1313592 >seq413 Length=15208799 Score = 123 bits (136), Expect = 3e-23 Identities = 298/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||||| ||||| ||| Sbjct 1884086 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCCCGTATCCCGAAAGGT 1884027 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 1884026 GTTCTCCTTATTGGTCCTCCTGGTACTGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGT 1883967 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 1883966 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 1883909 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| || ||||| || ||| ||| |||||| || || | Sbjct 1883908 GTGTTGGTGCTTCAAGGGTCCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCTCCGTGCA 1883849 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || | ||||| || ||||| || || | |||| | | | || |||| Sbjct 1883848 TTGTTTTTGTGGATGAAATAGATGCTGTTGGAAGGCAAAGAGGAACCGGAATTGGTGG-- 1883791 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 1883790 -AGGTAATGATGAAAGAGAACAGACGCTTAATCAGCTCCTGACGGAGATGGATGGTTTTG 1883732 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | ||||| ||||| || Sbjct 1883731 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGATATTCTTGACTCCG 1883672 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | || | || || |||||||| || Sbjct 1883671 CCTTGCTGAGACCAGGGCGTTTTGACCG 1883644 >seq393 Length=11819561 Score = 120 bits (132), Expect = 4e-22 Identities = 275/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| | |||||||| | || ||||||| |||||| ||| Sbjct 6859308 GTTGAGTTTCTGAAGAAGCCCGAGAGGTTCACTGCGGTTGGTGCCCGGATCCCGAAAGGT 6859249 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || || || | || ||| || || ||| Sbjct 6859248 GTTCTCCTTATTGGTCCTCCTGGTACCGGGAAAACGCTTTTGGCAAAAGCTATTGCTGGT 6859189 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | | ||||| ||||||||||| ||| Sbjct 6859188 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGCTCTGAGTTTGTTGAGATGTTTGTCGGT 6859129 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| || || |||||||| || | | ||| ||||| || || ||| Sbjct 6859128 GTTGGTGCCTCGAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCTTGCATT 6859069 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| |||||||| || || | |||| | | | || |||| | Sbjct 6859068 GTCTTTGTAGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---GGA 6859012 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 6859011 GGTAATGATGAAAGAGAACAGACTCTCAATCAGCTGCTAACTGAGATGGATGGATTTGAA 6858952 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | ||||| ||| | || |||| || || ||| | | || || ||||| Sbjct 6858951 GGTAACACTGGTATTATCGTGGTTGCTGCAACCAATAGAGCAGACATTCTTGA 6858899 >seq664 Length=12074320 Score = 109 bits (120), Expect = 7e-19 Identities = 278/413 (67%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCA-CAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTC 177617 |||| ||||| ||||| ||| ||||| |||| ||||||| ||||| || || |||| || Sbjct 4376634 TCAAGAAACT-CCTCAACAGTGTGTGACTCCTCCGTCGCCACAACGTAATCGTCAGGCTT 4376576 Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 ||||| || | |||||||||||| || || || |||||| || ||||| ||||| Sbjct 4376575 CTCTTGCTGCAACATGAGCCACATTGCCTCCACGTAGTCCCCAGCGAATCCCCAATCTCT 4376516 Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACT--CTCT-CTCACCTTTCACAAT-TTGTT 177733 | || | ||| || || || || || || |||| | ||| | || | Sbjct 4376515 CGACGCCTGGAGATTCCCAAG---AAAGAGCTTCCTCTGCAGACCAACCTTGATCCTCCC 4376459 Query 177734 TGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGT 177793 |||| || || |||||| | || || |||| | || || | ||||| ||||||| Sbjct 4376458 CAACGCTCTC-GTGATCTTCCTGGTCACGAAGTTCTCTCCACGACGAGGTGACTCGTGGT 4376400 Query 177794 TGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCC 177853 |||| | ||||||| ||||| | | ||| |||| ||||| |||||| | || Sbjct 4376399 TGAACAAGATTCCGTTACAGGCGAAAAGACCGTAGGCTTCTCTGTAATTCACAGTGTACC 4376340 Query 177854 AGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAG 177913 | ||||| || ||||||| | | || |||| |||| || || ||| ||| | Sbjct 4376339 AATGAGCAGCGCATTTGGAAGCAGCGTAAGGAGATCTGGGGTGAAACGGCGTCGTCTCCG 4376280 Query 177914 TTTGTGGAGTTTCTCGGACTT-TACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||||||| ||| || || |||||||| |||| | ||||||||| Sbjct 4376279 ACTGTGGAG----GCGGGGTTGCTCCGAACATCTCAGAAGATCCGGCTTGGTA 4376231 >seq320 Length=3991519 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TA--TCTTCAA 75184 || || | ||| | || ||||||||| ||||||| ||||||| || | || |||| || Sbjct 316856 CGTGATTTTGAATATGATTACTTTGGATTCAAAACTCTTGAGA-GATCGTACCTCTTAAA 316914 Query 75185 CGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGC 75244 | || |||||| | | |||| || ||| ||||| | ||| |||| || | ||| Sbjct 316915 AG--TCCATGGCAAAGTTGTTGAAAGGCCTCAGCACATGCTAATGAGGGTTGCTGTTGGC 316972 Query 75245 ATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG 75304 |||||| ||| || |||||||||| | |||| ||| | |||||| || | | Sbjct 316973 ATCCACAAGGACGATATTGATTCTGCAATCAAGACTTACCATTTGATGTCGCAGAGATGG 317032 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||| ||| | || || ||||||||||| || || ||||| || || Sbjct 317033 TTCACTCATGCATCTCCTACTCTCTTCAATGCAGGAACTCCAAGGCCTCA 317082 >seq481 Length=6868915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 64995 AGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA 65054 ||| ||| |||| | || || | | |||||| || | ||||| ||||| ||| | || Sbjct 949113 AGCAATCGAAACCATCCCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGA 949172 Query 65055 CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | | |||| |||||||||| | | | || || || || || || |||||||| Sbjct 949173 CGGA---TCTCAGACCTTCGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTT 949229 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| |||||| | || | ||| |||||||||| || |||||||| || | Sbjct 949230 CTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGATT 949289 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 |||||| || || | || || |||||||| || Sbjct 949290 GACCTTCTCCAACGAGTTGATCTCTCGAGATGAAGG 949325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564342730400