Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq497 544 2e-150 seq456 544 2e-150 seq219 544 2e-150 >seq497 Length=57642 Score = 544 bits (602), Expect = 2e-150 Identities = 719/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | || |||||||| | |||||||| || || | Sbjct 15637 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 15578 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | ||||||||| || || ||| || || Sbjct 15577 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCC 15519 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 15518 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAA 15459 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| ||| | |||| | | || || || | || || ||||| || Sbjct 15458 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 15399 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 15398 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 15339 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 15338 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 15279 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 15278 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 15219 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 15218 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 15159 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 15158 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCATCC 15099 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||||| ||||| || || ||||| || || | || ||||||||| || Sbjct 15098 GTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 15039 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 15038 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 14979 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 14978 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 14919 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| | || Sbjct 14918 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 14859 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | ||| ||||||||||| Sbjct 14858 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 14799 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 14798 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 14739 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 14738 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 14679 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||||||||| || ||||| || | || |||| Sbjct 14678 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 14644 >seq456 Length=23154 Score = 544 bits (602), Expect = 2e-150 Identities = 719/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | || |||||||| | |||||||| || || | Sbjct 16610 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 16551 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | ||||||||| || || ||| || || Sbjct 16550 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCC 16492 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 16491 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAA 16432 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| ||| | |||| | | || || || | || || ||||| || Sbjct 16431 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 16372 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 16371 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 16312 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 16311 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 16252 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 16251 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 16192 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 16191 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 16132 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 16131 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCATCC 16072 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||||| ||||| || || ||||| || || | || ||||||||| || Sbjct 16071 GTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 16012 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 16011 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 15952 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 15951 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 15892 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| | || Sbjct 15891 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 15832 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | ||| ||||||||||| Sbjct 15831 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 15772 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 15771 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 15712 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 15711 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 15652 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||||||||| || ||||| || | || |||| Sbjct 15651 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 15617 >seq219 Length=26726 Score = 544 bits (602), Expect = 2e-150 Identities = 719/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | || |||||||| | |||||||| || || | Sbjct 17407 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 17348 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | ||||||||| || || ||| || || Sbjct 17347 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATAGCTTTCATTGCTGCTCC 17289 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 17288 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTATGGAAACAA 17229 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| ||| | |||| | | || || || | || || ||||| || Sbjct 17228 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 17169 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 17168 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 17109 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 17108 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 17049 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 17048 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 16989 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 16988 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 16929 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 16928 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTGATGCATCC 16869 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||||| ||||| || || ||||| || || | || ||||||||| || Sbjct 16868 GTTTCACATGCTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 16809 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 16808 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 16749 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 16748 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 16689 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| | || Sbjct 16688 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 16629 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | ||| ||||||||||| Sbjct 16628 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 16569 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 16568 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 16509 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 16508 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 16449 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||||||||| || ||||| || | || |||| Sbjct 16448 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 16414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146213175911320