Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq497 578 4e-160 seq456 578 4e-160 seq219 578 4e-160 >seq497 Length=57642 Score = 578 bits (640), Expect = 4e-160 Identities = 729/999 (73%), Gaps = 12/999 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 14642 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 14701 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || Sbjct 14702 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACT 14761 Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 14762 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 14821 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | ||||| ||||| || | || || || | || || | |||||| || | | | Sbjct 14822 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 14881 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 || ||||||||| ||||| ||||||||||| || || || || || |||||||| || Sbjct 14882 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 14941 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 |||||||||||| ||||||||||| ||||| ||||||| | || || || | || Sbjct 14942 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 15001 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || || Sbjct 15002 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 15061 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 || ||||||||||| ||||| || ||||| || || || ||||| || ||||||||||| Sbjct 15062 GCCGCCGAATACACCAGCTACACCTAGCATGTGAAACGGATGCATCAGAATGTTGTGCTC 15121 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 15122 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 15181 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 15182 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 15241 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| Sbjct 15242 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 15301 Query 68009 ACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCC 68065 ||| | | | ||| | || | | ||||| | || | |||| |||| || Sbjct 15302 ACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 15358 Query 68066 ACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACC 68125 ||| || || | ||| ||||| | | ||| ||||||||||| || || || || | ||| Sbjct 15359 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 15418 Query 68126 GATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGA 68185 || || ||| |||||| || ||||| ||||| || ||||| || || | || || Sbjct 15419 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGAAGAGA 15478 Query 68186 ACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAAT 68245 || | ||||||||| | |||||||| ||||| |||||||| || |||||||| || || Sbjct 15479 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAAGCTAT 15538 Query 68246 GATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 15539 AATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 15595 Query 68303 AACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || | ||||| ||| ||| | ||||||||| Sbjct 15596 AATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 15634 >seq456 Length=23154 Score = 578 bits (640), Expect = 4e-160 Identities = 729/999 (73%), Gaps = 12/999 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 15615 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 15674 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || Sbjct 15675 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACT 15734 Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 15735 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 15794 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | ||||| ||||| || | || || || | || || | |||||| || | | | Sbjct 15795 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 15854 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 || ||||||||| ||||| ||||||||||| || || || || || |||||||| || Sbjct 15855 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 15914 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 |||||||||||| ||||||||||| ||||| ||||||| | || || || | || Sbjct 15915 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 15974 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || || Sbjct 15975 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 16034 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 || ||||||||||| ||||| || ||||| || || || ||||| || ||||||||||| Sbjct 16035 GCCGCCGAATACACCAGCTACACCTAGCATGTGAAACGGATGCATCAGAATGTTGTGCTC 16094 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 16095 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 16154 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 16155 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 16214 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| Sbjct 16215 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 16274 Query 68009 ACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCC 68065 ||| | | | ||| | || | | ||||| | || | |||| |||| || Sbjct 16275 ACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 16331 Query 68066 ACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACC 68125 ||| || || | ||| ||||| | | ||| ||||||||||| || || || || | ||| Sbjct 16332 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 16391 Query 68126 GATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGA 68185 || || ||| |||||| || ||||| ||||| || ||||| || || | || || Sbjct 16392 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGAAGAGA 16451 Query 68186 ACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAAT 68245 || | ||||||||| | |||||||| ||||| |||||||| || |||||||| || || Sbjct 16452 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAAGCTAT 16511 Query 68246 GATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 16512 AATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 16568 Query 68303 AACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || | ||||| ||| ||| | ||||||||| Sbjct 16569 AATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 16607 >seq219 Length=26726 Score = 578 bits (640), Expect = 4e-160 Identities = 729/999 (73%), Gaps = 12/999 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 16412 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 16471 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || Sbjct 16472 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACGCGTCCTTGACT 16531 Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 16532 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 16591 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | ||||| ||||| || | || || || | || || | |||||| || | | | Sbjct 16592 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 16651 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 || ||||||||| ||||| ||||||||||| || || || || || |||||||| || Sbjct 16652 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 16711 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 |||||||||||| ||||||||||| ||||| ||||||| | || || || | || Sbjct 16712 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 16771 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || || Sbjct 16772 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 16831 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 || ||||||||||| ||||| || ||||| || || || ||||| || ||||||||||| Sbjct 16832 GCCGCCGAATACACCAGCTACACCTAGCATGTGAAACGGATGCATCAGAATGTTGTGCTC 16891 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 16892 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 16951 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 16952 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 17011 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| Sbjct 17012 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 17071 Query 68009 ACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCC 68065 ||| | | | ||| | || | | ||||| | || | |||| |||| || Sbjct 17072 ACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 17128 Query 68066 ACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACC 68125 ||| || || | ||| ||||| | | ||| ||||||||||| || || || || | ||| Sbjct 17129 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 17188 Query 68126 GATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGA 68185 || || ||| |||||| || ||||| ||||| || ||||| || || | || || Sbjct 17189 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGAAGAGA 17248 Query 68186 ACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAAT 68245 || | ||||||||| | |||||||| ||||| |||||||| || |||||||| || || Sbjct 17249 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAAGCTAT 17308 Query 68246 GATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 17309 AATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 17365 Query 68303 AACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || | ||||| ||| ||| | ||||||||| Sbjct 17366 AATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 17404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566942203777800