Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq393 95.1 2e-14 seq664 91.5 2e-13 >seq393 Length=11819561 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||||||||| ||||| || || || || || || Sbjct 8004592 ATGCAAATCTTCGTTAAAACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 8004533 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || ||||| || ||||| || || Sbjct 8004532 GACACTATCGACAACGTAAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 8004473 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | || || |||||||| || ||| | || || | ||||| ||| Sbjct 8004472 CAGAGATTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 8004413 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 8004412 ATCCAGAAGGAGTCTACCCTTCACTTGGTCTT 8004381 >seq664 Length=12074320 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||||||||| || ||||| || || || ||| || Sbjct 3114599 ATGCAGATTTTTGTTAAGACGTTGACTGGAAAGACCATTACTTTGGAGGTTGAAAGCTCC 3114540 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||| || ||||| || || || || || || || || Sbjct 3114539 GACACCATTGACAACGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAG 3114480 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||| | ||||| |||||||| ||||| Sbjct 3114479 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGA 3114445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865550378000