Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq393 109 1e-18 seq350 87.8 4e-12 seq664 86.0 1e-11 seq440 86.0 1e-11 >seq393 Length=11819561 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| || || || | |||| ||| || ||| || || || Sbjct 8004135 ATACCACCACGAAGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 8004194 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | || || ||||| ||||||| | ||| || || || Sbjct 8004195 GCTAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGA 8004254 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| ||||| || | ||||| || Sbjct 8004255 GGAATGCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCA 8004314 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| ||||| || || || || | ||| |||||||| Sbjct 8004315 ACCTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || | || | ||||| |||||| ||| || ||||| | | Sbjct 4935803 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 4935862 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||| ||| ||||| ||||| || | ||||||||||| |||||| Sbjct 4935863 AGGGTTCGGCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCTGGTGGT 4935922 Query 192430 ATTCCTTCTTTATCTTGT 192447 || |||||||| || ||| Sbjct 4935923 ATACCTTCTTTGTCCTGT 4935940 >seq350 Length=9129079 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| ||||| | || || || | || | || || ||| || ||||| | Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCG 5338564 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | | || || | ||| || || || || || | | ||| ||||| ||||| Sbjct 5338565 AGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGG 5338624 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || || ||||| || | || |||||||| || Sbjct 5338625 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAACC 5338684 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||||| || || || || || ||||| ||||| | ||| ||||||||||| || Sbjct 5338685 TCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTCTT 5338737 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | | || || || | ||| | |||||| ||| || || |||| | Sbjct 2564625 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCT 2564566 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| || | ||| || || || || || | ||||||||||||||||||| Sbjct 2564565 AGTGTTCGACCATCCTCTAGTTGCTTCCCTGCGAATATAAGTCTCTGTTGATCAGGTGGT 2564506 Query 192430 ATTCCTTCTTTATCTTG 192446 || || ||||| || || Sbjct 2564505 ATCCCCTCTTTGTCCTG 2564489 >seq664 Length=12074320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| || || || || | || | || || || || |||||| Sbjct 3113686 ATACCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCA 3113745 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || || ||||| || ||||| || || || Sbjct 3113746 GCCAAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGA 3113805 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||| || || || | || || || Sbjct 3113806 GGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCC 3113865 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| |||||||| || || || || || | ||| |||||||| Sbjct 3113866 ACTTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 >seq440 Length=7283533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || ||||| | || | ||| || ||| || ||||| Sbjct 660931 ATACCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCG 660872 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| | || || | ||| || || || ||||| || ||||| || || || Sbjct 660871 GCCAAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGA 660812 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||| || || || | || || ||| Sbjct 660811 GGGATACCCTCTTTGTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCA 660752 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||||||| || || || || || | || || ||||| Sbjct 660751 ACCTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471107376750