Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq393 91.5 3e-13 seq440 86.0 1e-11 >seq393 Length=11819561 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| || || || | |||| ||| || || || || || Sbjct 8004135 ATACCACCACGAAGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 8004194 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | || || ||||| || |||| | ||| ||||| || Sbjct 8004195 GCTAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGA 8004254 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| ||| ||||| || || ||||| || Sbjct 8004255 GGAATGCCCTCCTTGTCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCA 8004314 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||||||| ||||| || || || || | || |||||||| Sbjct 8004315 ACCTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 >seq440 Length=7283533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || ||||| | || | ||| || || || ||||| Sbjct 660931 ATACCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCG 660872 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| |||| || | ||| || || || || || || ||||| ||||| || Sbjct 660871 GCCAAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGA 660812 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||| || || || || || || ||| Sbjct 660811 GGGATACCCTCTTTGTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCA 660752 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| || || || || || | ||| || ||||| Sbjct 660751 ACCTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || || || |||||||| ||||| || || || |||||||| || || ||| Sbjct 6972588 TGCTTTCCTGCGAAGATCAATCTCTGCTGGTCCGGGGGGATACCTTCTTTGTCCTGGATT 6972647 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| || || ||||||||||| || || || ||||| ||||| || || Sbjct 6972648 TTAGCTTTGACGTTGTCGATAGTATCTGAGCTCTCAACCTCGAGAGTGATGGTCTTCCCC 6972707 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 6972708 GTAAGGGTCTTGACGAAGATCTGCAT 6972733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128023489000