Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq367 136 1e-26 seq440 123 7e-23 seq413 95.1 4e-14 seq393 87.8 5e-12 seq320 87.8 5e-12 seq228 87.8 5e-12 >seq367 Length=1810539 Score = 136 bits (150), Expect = 1e-26 Identities = 363/543 (67%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| |||||||||| | |||| || || |||||||| || | | | | Sbjct 1313714 CCAGCTACATCAGGCCTATCCACAGTGACTTGCCGGTCAAACCTGCCCGGTCTAAGAAGA 1313655 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTG 288935 || | ||| | | ||||| ||| || || || ||||| |||| || | ||| || Sbjct 1313654 GCAGAGTCGAGAACATCGGGTCTATTGGTCGCAGCCAAGACAATAACAC---CGGAGTTA 1313598 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | ||| |||||||| || || | ||||||| || |||||||| ||||||||| Sbjct 1313597 CCAGAAAAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTT 1313538 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAA 289051 ||||| || ||| | ||||| ||| |||||||||||||||| || || | Sbjct 1313537 CCACCTCCC--AT-ACCTG-----CTCCTCTTTGCCTACCAACAGCATCAATCTCATCTA 1313486 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATG 289111 | |||| | ||| |||| || | |||| | |||| || || || || | |||| Sbjct 1313485 TAAAAACAATACAAGGAGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGATG 1313426 Query 289112 CTCCAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACA 289170 | |||| ||||||| | | || ||||| || ||||| | | || ||| ||||| || Sbjct 1313425 CACCAACACCAACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAA-GAATGGCACT 1313367 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 |||||| ||||| || || || |||| ||| ||||| || ||||| ||||| || | Sbjct 1313366 CCTGCTTCTCCTGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGGTGGACCAACC 1313307 Query 289231 AATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 || | ||| |||||| |||| || || || || | || || || || |||| || Sbjct 1313306 AACA-AACACCCTTTAGGTATCTTAGCTCCTAAAGCTGTGTACTTGTCTGGATTCTTCAA 1313248 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 || || || | ||| | | ||| || || | |||| |||||| ||||| |||| Sbjct 1313247 GAAATCAACCACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATCCCCAAA 1313188 Query 289350 AGT 289352 || Sbjct 1313187 TGT 1313185 >seq440 Length=7283533 Score = 123 bits (136), Expect = 7e-23 Identities = 279/412 (68%), Gaps = 18/412 (4%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| ||||||| || || || || || || | ||| || ||| | Sbjct 2581437 TAAACCCATCCATTTCGATTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTC 2581378 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| || || | |||||||||||||| || |||||||| | Sbjct 2581377 CTCCTAAA----CCGGTTC-CTC-TTATTCTCCCAACAGCATCAATCTCATCAATGAACA 2581324 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || |||| |||| || | ||| || || ||||| || | ||||| Sbjct 2581323 CTAAACATGGTGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 2581269 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| || || || |||| | | | || | || Sbjct 2581268 TCCTACACCAACAAACATCTCTATGAACTCCGAGCCGGACAATGAGAAAAACGGAACTCC 2581209 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| || ||||| || ||||| || Sbjct 2581208 AGCTTCTCCGGCTATGGCCTTGGCCAAGAGAGTCTTTCCGGTTCCCGGAGGTCCGGTCAA 2581149 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 || || || ||||| | ||| ||||| || || | ||||||| ||| | | || | Sbjct 2581148 CAGGACGCCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTCTCTGGGGTTCTCAAGA 2581090 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||||| || |||| || | || || || || |||||||||||| Sbjct 2581089 ATTCAACAATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 2581038 >seq413 Length=15208799 Score = 95.1 bits (104), Expect = 4e-14 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| || || ||||| || || | | || | | ||| || || | | Sbjct 2217975 CCAATCGCATCGATCTCATCAATAAATATAATGCTAGGTGCACATTGCCTAGCCTCTTGA 2217916 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || | ||| || | ||| | ||||| ||||||| |||| || | || || ||| | Sbjct 2217915 AACAAGTTTCTCACTCTGGAAGGTCCAACACCAACAAACATCTCCATGAAATCTGAACCA 2217856 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | ||| || ||| || || || | |||||||| ||||| Sbjct 2217855 GATA-TCGACAGAAACGGCACAGCTGATTCTCCAGCCGTAGCTTTTGCCAGAAGGGTCTT 2217797 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-CT 289267 || || || ||||| || |||| || | || ||||| | ||| || || || | || Sbjct 2217796 TCCAGTCCCTGGTGGGCCAACTAAAAGCGCACCTTTTGGGATTTTAGCTCC--CAAATCT 2217739 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| ||| ||| | || | |||| |||| || ||| | ||| ||||| Sbjct 2217738 TCATATTTCTTTGGGTTCTGAAGGAAATGCACAAATTCCATAATTTCTTGTTTAGCCTCC 2217679 Query 289327 TCACATCCTGCTACATC 289343 ||||||||||| ||||| Sbjct 2217678 TCACATCCTGCAACATC 2217662 >seq393 Length=11819561 Score = 87.8 bits (96), Expect = 5e-12 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||| || ||||| || || || | | ||| | | |||||| || | Sbjct 7564911 ACCAATAGCATCGATCTCGTCTATAAATATAATGCTCGGTGCAGATTGTCTAGCTTCTTG 7564852 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | ||| || | || | ||| | ||||||| |||| || | || || ||| | Sbjct 7564851 GAACAAATGTCTCACCCTCGAAGGTCCCACACCAACAAACATCTCCATGAAATCTGAACC 7564792 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | | || ||| | ||| || ||| || || || | || | ||| |||| Sbjct 7564791 GGAGA-TAGATAGAAACGGGACACCTGATTCTCCAGCAGTAGCTTTTGCTAAAAGGGTCT 7564733 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266 | || |||||||| || || |||| || | || ||||| | || || || || | | Sbjct 7564732 TTCCGGTTCCAGGAGGACCGACTAAAAGCGCACCTTTTGGGATCTTAGCACC--CAAATC 7564675 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | |||| |||| | || | ||||| ||| | ||| | ||||||||| Sbjct 7564674 TTCATACTTTTTAGGGTTCTTGAGGAAATGTACAAACTCCATGATTTCTTGTTTTGCCTC 7564615 Query 289326 ATCACATCCTGCTACATC 289343 ||||||||| || ||||| Sbjct 7564614 ATCACATCCAGCAACATC 7564597 >seq320 Length=3991519 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || || || || ||||| |||||||| | |||||| |||| | Sbjct 317424 TACCCTTCCTCTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCA 317365 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||||||| || || ||||| || || ||||| | |||| || | Sbjct 317364 GCATTGGAACAATACCATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCAC 317305 Query 156166 GAACATTATGAA 156177 | | |||||||| Sbjct 317304 GGATATTATGAA 317293 >seq228 Length=2719846 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 233259 TTAAAAATGTT-GTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGC 233317 || |||| ||| | ||| || || |||||||| ||||||||||||||||| |||| |||| Sbjct 2618001 TTCAAAAAGTTAGCAGCGCCATGTGCAATCATGCAATCACGTTCCATTTCTCCAAAACGC 2617942 Query 233318 AGACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCC 233377 |||||||||||| ||| | || | ||| ||| | ||||| | ||||| Sbjct 2617941 AGACCACCATCACGTGAACGTCCTTCAGCTGGTTGTCTTGTTAAGATTTGCACAGGACCT 2617882 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCA 233417 | |||| | | ||| || || | |||||||||||||| Sbjct 2617881 CGTCCACGCGAGTGAATCTTGTCATCAACCATATGCTTCA 2617842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804305347585