Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021556.1 Length=39981 Score E Sequences producing significant alignments: (Bits) Value seq334 170 5e-38 >seq334 Length=7771 Score = 170 bits (188), Expect = 5e-38 Identities = 139/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7861 TCGTCGGCGACTTCGCCAACGGCATCCACTGGGGCGTTCAGCGGGATATCCCCGTCGAGC 7920 |||| ||||||||| |||||||||| | ||||||| |||||||| | | ||||| |||| Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 7921 TCATCAAGTACGGCGATCCCGACGGGCAAGGCGACCTGAAGCGCCACAACCAGATCGCGC 7980 | |||| |||||||| || |||||||| ||||||||| ||| | ||||||||||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 7981 TTCGGCTCGAAATCGTCTATGGCTGGTACGTCTTCACCGACCGCTTCGT 8029 | || || || ||||||| ||||||||||||||||| || |||||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGATCGCTTCGT 3045 Score = 158 bits (174), Expect = 3e-34 Identities = 428/643 (67%), Gaps = 19/643 (3%) Strand=Plus/Minus Query 674 CCCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTT-CGCCCTGGCGCTGCTC 732 |||| |||||||| ||||||||| ||| || | | ||||| ||| ||||| || | Sbjct 7356 CCCGCCAGGTCGGGAAGACGTACACGATTGGTTCGCT-GTGTTTCGCGTTGGCGATGGTG 7298 Query 733 ACGCCTGGGCTGACTG-TCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGTT 791 ||||| ||| | || || | ||||| ||||| |||||| || ||| ||||| Sbjct 7297 ACGCCGGGG-TCTTTGATCTTGTGGACGGCGCATCGGACGCGTACGCATGCGGAGACGTT 7239 Query 792 CGGCTCGATGAAGGCCATGTGCGCAACG-CCGCTGGTGAACGCGCACGTGCGGAACGTCA 850 || |||||| | ||| || | || ||| | | || || ||| | || Sbjct 7238 TGGGTCGATGGCTGGGATG-GCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGT-- 7182 Query 851 GCGACGCGCGC--GGCGACGAGGGAATCTATCTGCACAACGGGAGCCGGATCCTGTTCGG 908 ||| || ||| || || ||| ||| | | | ||||| || || |||| || Sbjct 7181 GCGTCGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGG 7122 Query 909 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 968 || || ||| || ||||||| || ||||| || | | || | |||| || Sbjct 7121 TGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGA 7062 Query 969 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1028 ||||||| ||||| || ||||||||||| ||| || ||||| | | |||| | | Sbjct 7061 GGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACC 7002 Query 1029 GAAT---CCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGT 1085 ||| | | || || || || ||||| || ||||| || |||||| ||||||| || Sbjct 7001 TAATGGTCTGGTGTTCATGATC---GGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGT 6945 Query 1086 GTTCACGATGCTTCGGCAAGACGCGCTCGACGGCGAGTCCGAAGGCACGCTGTATGTCGA 1145 |||| |||||| ||| | | || || |||||| | | | | |||| || || Sbjct 6944 GTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGA 6885 Query 1146 GTTCTCCGCGGACGAGGGCGCGCACCCCGACGACCGGGCGCAGCTGCGCAAGGCGAACCC 1205 | | || || || ||| |||| |||| |||||||| ||| | ||| ||||||||||| Sbjct 6884 GCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCGGAAGGCGAACCC 6825 Query 1206 GTCGTATCCGCACCGCACCAGTGAGCGCGCGATTCGGCGTATGCGAAAGAACCT---CAC 1262 ||||| |||||||| || ||||| ||||||| ||| ||||| ||| || | Sbjct 6824 GTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTC 6765 Query 1263 CGAAGAGTCATTTCTGCGTGAGGCGTTCGGCATCTGGGACAAG 1305 | ||||| |||| ||||||| | |||||||||||| || Sbjct 6764 TGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAG 6722 Score = 154 bits (170), Expect = 4e-33 Identities = 278/397 (70%), Gaps = 16/397 (4%) Strand=Plus/Minus Query 7152 CTCCCCCGCAACATCGCGGACGGGATGGTGA--AGGACGTCGTGCAGGGCTCGACGGTCG 7209 || ||||||||||| |||||||| ||| | | | ||| || || ||||||||| | Sbjct 3919 CTGCCCCGCAACATTGCGGACGGCATGATCACCAAGACTCAGTCCAC--CTCGACGGTTG 3862 Query 7210 CCGCGCTGTCGGCGCGCA-AGCCGCAGCGATTCGGCAATGAG---GAC-ATCATCACTTT 7264 | |||||||| | || |||||||| ||||| |||| ||| ||| |||| Sbjct 3861 CGAAGCTGTCGG-GTGCTGAGCCGCAGAAGTTCGG---TGAGACTGACTATCTGACCTTT 3806 Query 7265 CA-ACGGCCGGCCGAAGGCTGAGTTCGTGGGTGAGGGTCAACAGAAGTCGAGCACCACCG 7323 | ||| | ||| || |||||||||| ||||| | ||| || |||||| | Sbjct 3805 GACACGTTCCCCCGC--GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTG 3748 Query 7324 GCGAATTCGACTTCGTGACCAGCACGCCGAAGAAGGCGCAGGTCACGATGCGCTTCAACG 7383 | | |||| || ||||||| | ||| ||||| |||||||| |||||||||||| Sbjct 3747 GTGCGTTCGGCTCCGTGACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACC 3688 Query 7384 AAGAGGTTCAGTGGGCCGACGAGGACTACCAGCTCGGCGTGCTCGCGACCCTGAGCGAGG 7443 | ||||| ||||||||||| |||||||||||||| ||| ||| || ||| | || Sbjct 3687 AGGAGGTCCAGTGGGCCGATGAGGACTACCAGCTGAACGTCCTCTCGCAGCTGTCCCAGA 3628 Query 7444 CCGGCGCCGAAGCACTGGCGCGCGCGCTGGATCTGGGTCTGTATCACCGGATCAACCCGC 7503 || |||| || ||| | ||||| || || || || ||||| ||||| ||| | || Sbjct 3627 AGGGTTCCGAGGCCCTGTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATCCAGCCTT 3568 Query 7504 TGACGGGAACCGTGATCCCCGGCTGGTCGAACTACCT 7540 |||||| | || ||| |||| ||| |||||||| Sbjct 3567 CGACGGGCGCTGTCATCACCGGGTGGGACAACTACCT 3531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127816529927030