Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq481 187 3e-41 >seq481 Length=6868915 Score = 187 bits (206), Expect = 3e-41 Identities = 226/300 (75%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||||||||| ||||||||||| || || || || | | |||| | |||| Sbjct 949048 CCGAGTGGATGTTCTCGATCGCGATCTGGAATCCATAGAAAGCACGCGCCTCCGAGACTT 948989 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||| | || || ||||| ||||| ||||| |||||||| Sbjct 948988 GTACATCGGACATGAACCTGGAAGCAAGATTCTCCAGGACGATTCCGTCTGAGGCGGCGA 948929 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | ||||| |||||||| ||||| ||||| |||||| ||||| |||| | |||||| Sbjct 948928 AGAAAGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGTCGC 948869 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| || | ||| | ||||| || || || || ||||||| || || |||||||| || Sbjct 948868 GACCGTCT-TGCGAT-AGGTCGACTTCTTCCGCCGTCCAGAAAGATGCTTCGGCCTTCTT 948811 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 948810 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 948752 Score = 136 bits (150), Expect = 5e-26 Identities = 223/319 (70%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| || || |||| |||||||| Sbjct 949640 GCCTTTTGGTAATCACCAACTCTCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATT 949581 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | | |||| ||| || | ||||||| | Sbjct 949580 AACTCCATCCAATCAAACGGATTCGCCACACCGTAGACCTTCCCGTACCCGAGCGCGCCC 949521 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || ||||||||||| ||||| | ||| ||| | |||||| || | Sbjct 949520 AAAAGCCTATCCGCCACAAACTCGATATACTGACTCATCAGGTCCCGGTTCATCCCCACT 949461 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| ||| |||| |||| |||||||| |||||||||||||||| ||| || | Sbjct 949460 AACGCGCACGGAAGCGCGTCGCAGACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 949401 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || ||||| |||| | || | ||||||||| |||||||| Sbjct 949400 ATC-GACTTCACTCGCTCCTCCGAGAGCTTCGTCCTCAGGAGCGTGTAGAGAAGGCAGGC 949342 Query 868990 AAAGTCGCAGTGCAACCCT 869008 || |||||||| || ||| Sbjct 949341 GAAATCGCAGTGTAAGCCT 949323 Score = 122 bits (134), Expect = 1e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || ||| ||||| |||||| |||| | || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| | |||||| || || ||||| ||||| || |||||| ||| || Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 |||||| | ||||| ||||| | ||| || || |||||||||||| ||||| Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCT-GAGATCC-----GTCGATCCACTTCATGGCCCAC 949152 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | || || ||| || | || | || ||||| || || ||||| ||||| | || Sbjct 949151 TGTGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATGGTCTCTCTCT 949092 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| || || |||| ||||| Sbjct 949091 TTGTTGTCCTTGATGTACGTATCGAGGAGGAG 949060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107081344398485