Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq481 178 2e-38 seq440 86.0 1e-10 >seq481 Length=6868915 Score = 178 bits (196), Expect = 2e-38 Identities = 237/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || ||| |||||| |||||| ||| | || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | ||||| || || ||||| ||||| || |||||| ||| || Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| || | ||||| || || | || || || |||||||||||| |||||| Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTG-AGATCC-----GTCGATCCACTTCATGGCCCAC 949152 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||| || ||| || | || | || ||||| || || ||||| ||||| |||| Sbjct 949151 TGTGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATGGTCTCTCTCT 949092 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| || |||| |||||| ||| |||| ||||||||||| ||| Sbjct 949091 TTGTTGTCCTTGATGTACGTATCGAGGAGGAGACTGTACATCTCCGAGTGGATGTTCTCG 949032 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| ||||| |||||| Sbjct 949031 ATCGCGATCTGGAATCCATAGAAAGCA 949005 Score = 145 bits (160), Expect = 1e-28 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| || || |||||| | | || || ||||| ||||| ||| Sbjct 949001 GCCTCCGAGACTTGTACATCGGACATGAACCTGGAAGCAAGATTCTCCAGGACGATTCCG 948942 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| || ||||||||||| ||||| ||||| |||||| ||||| |||| Sbjct 948941 TCTGAGGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGA 948882 Query 796270 GAGACCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| | ||||| | | || |||||||| || || || ||||| || || | Sbjct 948881 TTCTCCCAGTCGCGACCGTCTTG-CGAT-AGGTCGACTTCTTCCGCCGTCCAGAAAGATG 948824 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||| |||||||||||||| ||| || ||||| |||| ||||||| Sbjct 948823 CTTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA 948773 Score = 123 bits (136), Expect = 4e-22 Identities = 205/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| || || |||| |||||||| ||||||||||| ||||| || || Sbjct 949614 CTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATCCAATCAAACGGATTCGC 949555 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | |||| |||| || ||||||||| | | || | || || || || || || Sbjct 949554 CACACCGTAGACCTTCCCGTACCCGAGCGCGCCCAAAAGCCTATCCGCCACAAACTCGAT 949495 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 ||||| | ||| ||| | |||||| || | | ||| ||||| |||| |||| || Sbjct 949494 ATACTGACTCATCAGGTCCCGGTTCATCCCCACTAACGCGCACGGA-AGCGCGTCGCAGA 949436 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 ||||||| |||||||||||||||| ||| || |||| | || | || || ||| Sbjct 949435 CAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATC-GACTTCACTCGCTCCTCCGAG 949377 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATG 794209 |||| ||| | || | ||||||||| |||||||| || ||||| || Sbjct 949376 AGCTTCGTCCTC-AGGAGCGTGTAGAGAAGGCAGGCGAAATCGCAGTG 949330 >seq440 Length=7283533 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||| ||||| ||||| || ||||| ||| | |||| ||| ||| ||| | Sbjct 6755196 ACTTGGTGACGGCTTTGGTTCCCTCGGACACGGCATGCTTAGCCAATTCTCCGGGCAAAA 6755137 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||| |||||||| ||||| ||||||| Sbjct 6755136 CGAGGCGGACGGCGGTTTGGATTTCGCGGG 6755107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916171405934495