Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_022972.2 Length=37372 Score E Sequences producing significant alignments: (Bits) Value seq334 138 3e-28 >seq334 Length=7771 Score = 138 bits (152), Expect = 3e-28 Identities = 694/1085 (64%), Gaps = 37/1085 (3%) Strand=Plus/Minus Query 174 CGGCTCGACGAGTTGAAGGCTATGCGTCGGATCCTTGTGACGCACATGGAGAACGAGAAC 233 || || || ||| ||||||| |||||||| | || | | ||||||| || ||| | || Sbjct 7750 CGCCTTGAGGAGCTGAAGGCGCTGCGTCGGGTGCTGGCGGCGCACATTGACAACCCGGAC 7691 Query 234 ACTCTGGCCCGGGATCTGGCTGCGCTGACACGTCAGGTGCGGGAAATCTCGAAGGAGATC 293 ||||| || || ||||| || ||||| | || ||| | ||||| | ||||||||||| Sbjct 7690 ACTCTTGCTCGCGATCTTGCGGCGCTCTCTCGGCAGCTTCGGGATGTGTCGAAGGAGATT 7631 Query 294 GATGATCTTTCCCGGTCTGCGGAGAAGGAC-GATCTGATCAGGGCGGCG--GATACGAGT 350 || || || | | | | || ||| | | || | | || || | || Sbjct 7630 GAGGAGCTGGAACCGCCGGAAGATGAGGTGAGCGCGGACGATGACGACGCTGGCACCTCC 7571 Query 351 GACGAGAAGTTCAACCCCTACGCTGTTTGAGTCTGCCCGGCATGTGATCGTCCCTGAGGG 410 |||| ||||| | | | ||| | ||| |||||| ||| ||||| | |||||||| Sbjct 7570 GACGCCCCGTTCAGGCTCGAAGCTATCTGATCTTGCCCGTCATCTGATCCTGCCTGAGGG 7511 Query 411 GATCGTGTCGACTGGGTGGCCTGCGGTGAGGGACACTCTTGGCAAGT-TGGGCATTACGT 469 || || |||||||| |||||||| || || | | |||| | ||| | ||| Sbjct 7510 CATTGTTTCGACTGGTTGGCCTGCTGTTCAGG-CGCAGTTGGAGCGGATGGATACCCCGT 7452 Query 470 TTGATTCCTGGCAGCAGGG-CGCTTCACAGCTGATCCTGTCCAAGGATGAGAACGGCTTG 528 | || | ||||||| || | | | || | | || ||| | | | || | Sbjct 7451 TGGACCCGTGGCAGCGTGGTCTGGTGTCTGCGGCGC-TGGGGAAGCGCGCGGATGGGCAG 7393 Query 529 TATGCGACCACCGTGGGCGGCGTGACGATCAGCATCCCTCGGCAGGTCGGTAAGACGTTC 588 |||||| | | | || |||||| | || || || |||||||| ||||||| | Sbjct 7392 TATGCGGCGGGCATTGGTGGCGTGGTGGCGTCGATTCC-CGCCAGGTCGGGAAGACGTAC 7334 Query 589 ATGATCGGGTGGATCGTCTTCGCCCTCTGCATCATCTACCCGGGCT---TGACCGTTGTT 645 | ||| || | | | ||||| | || | ||||| | ||| | |||| Sbjct 7333 ACGATTGGTTCGCTGTGTTTCGCGTTGGCGATGGTGACGCCGGGGTCTTTGATC-TTGT- 7276 Query 646 TGGACGGCTCACCGGGCCTCTACCGCTGATGAGACGTT-----CGATGGCATGAAGTCGA 700 ||||||| || ||| | ||| || |||||||| ||||||| | || Sbjct 7275 -GGACGGCGCATCGGACGCGTACGCATGCGGAGACGTTTGGGTCGATGGCTGG-----GA 7222 Query 701 TGGCCGCGTCGCCGACGATGGCGCCGCACATTGA--CCGTACGCCGGACAACGGCAGCGA 758 |||| | | |||| |||| |||| | || | || || ||| | | | | || Sbjct 7221 TGGCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGTGCGTCGGGCGAATG--GTGA 7164 Query 759 GCAGAAGATTGAGTTCAAGAACGGCTCTCGTGTGGTGTTCGGCGCCCGTGAGCGCGGTTT 818 |||| ||| | ||||||||||| || || | |||| || || || ||| || || Sbjct 7163 GCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGGTGCTCGCGAGTCTGGCTT 7104 Query 819 CGGGCGAGGCTTCACGAAGCTCGACATTGTCGTCTTTGACGAGGCGCAGATCCTCACGGA 878 ||| || || ||| ||||| | ||| | | |||| || |||||||||||||||||||| Sbjct 7103 CGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGAGGCGCAGATCCTCACGGA 7044 Query 879 ACGCTCCATCGACGACATGATCCCGGCGCAGAACGCCTCTGGCAACGCGCTGACGATCAT 938 |||| || |||||| | ||||| |||||| | || | ||| | |||| Sbjct 7043 GAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACCTAATGGTCTGGTGTTCAT 6984 Query 939 GATTGGGACGCCGCCGAAGCCGATCGACCCCTCGGAAGTGTTCGAGGACGC-CCGTCGGG 997 ||| || || || ||| || | ||||| || |||||| || || ||| | Sbjct 6983 GATCGGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGTGTTC-TCGATGCGCCGGGACG 6925 Query 998 CTGCCCTGGCTGGGGAAGCGCCTGACGCGCTTTACATCGAGTTCAGCGCGGACCGGAAGG 1057 | || ||| | || || | || |||| | | ||| | ||| | || || | | | Sbjct 6924 CGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGAGCTGTCGGCCGATAAGGACG 6865 Query 1058 CCGACCCGGATGACCGGGCGCAGTGGCGGAAGGCGAACCCTTCGTATCCCAGCCGGACCA 1117 | ||||||| ||||| ||| |||||||||||||||||| |||| || |||||| Sbjct 6864 CGAACCCGGACGACCGTGCGGCGTGGCGGAAGGCGAACCCGTCGTTCCCGCACCGGACGG 6805 Query 1118 AGGAAGCGGCGATGTTGCGGATGC----GCCGCAAGCTTTCGCCGGACTCCTTCCTCCGG 1173 || | ||||| ||||| |||| || || | | | | || || || | ||| Sbjct 6804 GTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTCTGTC-GAGTCGTTTCGCCGT 6746 Query 1174 GAAGCGATGGGCATCTGGGATGAGATGGCATCG-CGAAAGACCGCTTTCCCGCCGGGGGC 1232 || | ||||||||||||| |||| ||| || | | | || |||||||| || || Sbjct 6745 GAGGGTCTGGGCATCTGGGACGAGA-AGCAGCGTGGCCGGTCGGCGTTCCCGCCTGGCGC 6687 Query 1233 GTGGG 1237 ||||| Sbjct 6686 GTGGG 6682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119467799822140